Primary sequence based protein–protein interaction binder generation with transformers
Published 2023 View Full Article
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Title
Primary sequence based protein–protein interaction binder generation with transformers
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Keywords
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Journal
Complex & Intelligent Systems
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-10-26
DOI
10.1007/s40747-023-01237-7
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Note: Only part of the references are listed.- Transformers in Vision: A Survey
- (2022) Salman Khan et al. ACM COMPUTING SURVEYS
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- (2020) Yifei Qi et al. Journal of Chemical Information and Modeling
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- (2020) Zhongrun Xiang et al. WATER RESOURCES RESEARCH
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- (2020) Zheng Huang et al. Biomedical Signal Processing and Control
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- (2020) Yunjie Li et al. IET Radar Sonar and Navigation
- Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody
- (2020) Dora Pinto et al. NATURE
- Neighborhood Preference of Amino Acids in Protein Structures and its Applications in Protein Structure Assessment
- (2020) Siyuan Liu et al. Scientific Reports
- Signal Peptides Generated by Attention-Based Neural Networks
- (2020) Zachary Wu et al. ACS Synthetic Biology
- DeepAffinity: interpretable deep learning of compound–protein affinity through unified recurrent and convolutional neural networks
- (2019) Mostafa Karimi et al. BIOINFORMATICS
- Measuring rank robustness in scored protein interaction networks
- (2019) Lyuba V. Bozhilova et al. BMC BIOINFORMATICS
- ProfPPIdb: Pairs of physical protein-protein interactions predicted for entire proteomes
- (2018) Linh Tran et al. PLoS One
- Computational Protein Design with Deep Learning Neural Networks
- (2018) Jingxue Wang et al. Scientific Reports
- STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
- (2018) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Phage display-derived human antibodies in clinical development and therapy
- (2016) André Frenzel et al. mAbs
- Evolutionary profiles improve protein–protein interaction prediction from sequence
- (2015) Tobias Hamp et al. BIOINFORMATICS
- More challenges for machine-learning protein interactions
- (2015) Tobias Hamp et al. BIOINFORMATICS
- Computational Design of a Protein-Based Enzyme Inhibitor
- (2013) Erik Procko et al. JOURNAL OF MOLECULAR BIOLOGY
- Affinity maturation of a computationally designed binding protein affords a functional but disordered polypeptide
- (2013) Maren Butz et al. JOURNAL OF STRUCTURAL BIOLOGY
- Structure-Based Redesign of the Binding Specificity of Anti-Apoptotic Bcl-xL
- (2012) T. Scott Chen et al. JOURNAL OF MOLECULAR BIOLOGY
- Flaws in evaluation schemes for pair-input computational predictions
- (2012) Yungki Park et al. NATURE METHODS
- Gene Ontology-driven inference of protein–protein interactions using inducers
- (2011) Stefan R. Maetschke et al. BIOINFORMATICS
- Chemokines in health and disease
- (2011) Dayanidhi Raman et al. EXPERIMENTAL CELL RESEARCH
- Hotspot-Centric De Novo Design of Protein Binders
- (2011) Sarel J. Fleishman et al. JOURNAL OF MOLECULAR BIOLOGY
- Computational Design of High-Affinity Epitope Scaffolds by Backbone Grafting of a Linear Epitope
- (2011) Mihai L. Azoitei et al. JOURNAL OF MOLECULAR BIOLOGY
- Metal-Mediated Affinity and Orientation Specificity in a Computationally Designed Protein Homodimer
- (2011) Bryan S. Der et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Integrating energy calculations with functional assays to decipher the specificity of G protein–RGS protein interactions
- (2011) Mickey Kosloff et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Scoring Protein Relationships in Functional Interaction Networks Predicted from Sequence Data
- (2011) Gaston K. Mazandu et al. PLoS One
- Computation-Guided Backbone Grafting of a Discontinuous Motif onto a Protein Scaffold
- (2011) M. L. Azoitei et al. SCIENCE
- Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin
- (2011) S. J. Fleishman et al. SCIENCE
- Computational Design of a PAK1 Binding Protein
- (2010) Ramesh K. Jha et al. JOURNAL OF MOLECULAR BIOLOGY
- iWRAP: An Interface Threading Approach with Application to Prediction of Cancer-Related Protein–Protein Interactions
- (2010) Raghavendra Hosur et al. JOURNAL OF MOLECULAR BIOLOGY
- Protein–Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks
- (2010) Javier De Las Rivas et al. PLoS Computational Biology
- Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function
- (2009) Sankaran Sandhya et al. PLoS One
- Computational Redesign of a Protein–Protein Interface for High Affinity and Binding Specificity Using Modular Architecture and Naturally Occurring Template Fragments
- (2008) V. Potapov et al. JOURNAL OF MOLECULAR BIOLOGY
- Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences
- (2008) Yanzhi Guo et al. NUCLEIC ACIDS RESEARCH
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