Extending RAD tag analysis to microbial ecology: a comparison between MultiLocus Sequence Typing and 2b-RAD to investigateListeria monocytogenesgenetic structure
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Extending RAD tag analysis to microbial ecology: a comparison between MultiLocus Sequence Typing and 2b-RAD to investigateListeria monocytogenesgenetic structure
Authors
Keywords
-
Journal
Molecular Ecology Resources
Volume 16, Issue 3, Pages 823-835
Publisher
Wiley
Online
2015-11-27
DOI
10.1111/1755-0998.12495
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The evolution and epidemiology of Listeria monocytogenes in Europe and the United States
- (2015) Sara Lomonaco et al. INFECTION GENETICS AND EVOLUTION
- An improved 2b-RAD approach (I2b-RAD) offering genotyping tested by a rice (Oryza sativa L.) F2 population
- (2014) Yu Guo et al. BMC GENOMICS
- L. monocytogenes in a cheese processing facility: Learning from contamination scenarios over three years of sampling
- (2014) I. Rückerl et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- High-throughput informative single nucleotide polymorphism-based typing of Neisseria gonorrhoeae using the Sequenom MassARRAY iPLEX platform
- (2014) E. Trembizki et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Listeria monocytogenes Persistence in Food-Associated Environments: Epidemiology, Strain Characteristics, and Implications for Public Health
- (2014) V. FERREIRA et al. JOURNAL OF FOOD PROTECTION
- Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference
- (2014) A. Mastretta-Yanes et al. Molecular Ecology Resources
- Ultra Deep Sequencing of Listeria monocytogenes sRNA Transcriptome Revealed New Antisense RNAs
- (2014) Sebastian Behrens et al. PLoS One
- A PNPase Dependent CRISPR System in Listeria
- (2014) Nina Sesto et al. PLoS Genetics
- Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome
- (2013) Carsten Kuenne et al. BMC GENOMICS
- The ubiquitous nature ofListeria monocytogenesclones: a large-scale Multilocus Sequence Typing study
- (2013) Jana K. Haase et al. ENVIRONMENTAL MICROBIOLOGY
- Optimized Multilocus Variable-Number Tandem-Repeat Analysis Assay and Its Complementarity with Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing for Listeria monocytogenes Clone Identification and Surveillance
- (2013) V. Chenal-Francisque et al. JOURNAL OF CLINICAL MICROBIOLOGY
- SNaPBcen: a Novel and Practical Tool for Genotyping Burkholderia cenocepacia
- (2013) N. Eusebio et al. JOURNAL OF CLINICAL MICROBIOLOGY
- “Epidemic Clones” of Listeria monocytogenes Are Widespread and Ancient Clonal Groups
- (2013) Thomas Cantinelli et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Stacks: an analysis tool set for population genomics
- (2013) Julian Catchen et al. MOLECULAR ECOLOGY
- A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel
- (2013) J. M. Pujolar et al. Molecular Ecology Resources
- SNaPaer: A Practical Single Nucleotide Polymorphism Multiplex Assay for Genotyping of Pseudomonas aeruginosa
- (2013) Nadia Eusebio et al. PLoS One
- Evolutionary Dynamics of the Accessory Genome of Listeria monocytogenes
- (2013) Henk C. den Bakker et al. PLoS One
- Whole genome phylogeny for 21Drosophilaspecies using predicted 2b-RAD fragments
- (2013) Arun S. Seetharam et al. PeerJ
- Diversity of Listeria Species in Urban and Natural Environments
- (2012) Brian D. Sauders et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
- (2012) Alexandre P Francisco et al. BMC BIOINFORMATICS
- Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes
- (2012) Torsten Hain et al. BMC GENOMICS
- Genetic diversity and molecular typing of Listeria monocytogenes in China
- (2012) Yan Wang et al. BMC MICROBIOLOGY
- Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
- (2012) M. V. Larsen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Methods used for the detection and subtyping of Listeria monocytogenes
- (2012) Snehal Jadhav et al. JOURNAL OF MICROBIOLOGICAL METHODS
- 2b-RAD: a simple and flexible method for genome-wide genotyping
- (2012) Shi Wang et al. NATURE METHODS
- High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
- (2012) Nicholas J. Loman et al. NATURE REVIEWS MICROBIOLOGY
- High-Throughput Multilocus Sequence Typing: Bringing Molecular Typing to the Next Level
- (2012) Stefan A. Boers et al. PLoS One
- The non-coding RNA world of the bacterial pathogenListeria monocytogenes
- (2012) Jeffery R. Mellin et al. RNA Biology
- Toward a Systemic Understanding of Listeria monocytogenes Metabolism during Infection
- (2012) Thilo M. Fuchs et al. Frontiers in Microbiology
- Stress Survival Islet 1 (SSI-1) Survey inListeria monocytogenesReveals an Insert Common toListeria innocuain Sequence Type 121L. monocytogenesStrains
- (2011) Ingeborg Hein et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Novel Multiplex Single Nucleotide Polymorphism-Based Method for Identifying Epidemic Clones of Listeria monocytogenes
- (2011) Sara Lomonaco et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley
- (2011) Yada Chutimanitsakun et al. BMC GENOMICS
- Recombination and positive selection contributed to the evolution of Listeria monocytogenes lineages III and IV, two distinct and well supported uncommon L. monocytogenes lineages
- (2011) Yeu-Harn Lucy Tsai et al. INFECTION GENETICS AND EVOLUTION
- Use of the Accessory Genome for Characterization and Typing of Acinetobacter baumannii
- (2011) J. F. Turton et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Multilocus sequence typing of Salmonella strains by high-throughput sequencing of selectively amplified target genes
- (2011) Pallavi Singh et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
- (2011) Dent A. Earl et al. Conservation Genetics Resources
- Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions
- (2010) Chad Laing et al. BMC BIOINFORMATICS
- Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics
- (2010) Renato H. Orsi et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Resolving postglacial phylogeography using high-throughput sequencing
- (2010) K. J. Emerson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
- (2010) Paul A. Hohenlohe et al. PLoS Genetics
- Amplified Fragment Length Polymorphism and Multi-Locus Sequence Typing for high-resolution genotyping of Listeria monocytogenes from foods and the environment
- (2009) Antonio Parisi et al. FOOD MICROBIOLOGY
- Multilocus Genotyping Assays for Single Nucleotide Polymorphism-Based Subtyping of Listeria monocytogenes Isolates
- (2008) T. J. Ward et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
- A New Perspective on Listeria monocytogenes Evolution
- (2008) Marie Ragon et al. PLoS Pathogens
- Virulence characterization and genotypic analyses of Listeria monocytogenes isolates from food and processing environments in eastern China
- (2007) Lingli Jiang et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started