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Title
Simulation-based comprehensive benchmarking of RNA-seq aligners
Authors
Keywords
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Journal
NATURE METHODS
Volume 14, Issue 2, Pages 135-139
Publisher
Springer Nature
Online
2016-12-13
DOI
10.1038/nmeth.4106
References
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Related references
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- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
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- A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq
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- Field guide to next-generation DNA sequencers
- (2011) TRAVIS C. GLENN Molecular Ecology Resources
- SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data
- (2011) Songbo Huang et al. Frontiers in Genetics
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
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- MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
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- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- PlasmoDB: a functional genomic database for malaria parasites
- (2008) C. Aurrecoechea et al. NUCLEIC ACIDS RESEARCH
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