Physiological, Cytological, and Transcriptomic Analysis of Magnesium Protoporphyrin IX Methyltransferase Mutant Reveal Complex Genetic Regulatory Network Linking Chlorophyll Synthesis and Chloroplast Development in Rice

Melon yellow-green plant (Cmygp) encodes a Golden2-like transcription factor regulating chlorophyll synthesis and chloroplast development

(2023) Sen Yang et al.   THEORETICAL AND APPLIED GENETICS

OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice

(2022) Zhennan Qiu et al.   Rice

CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low‐temperature conditions in rice

(2021) Xinyong Liu et al.   Journal of Integrative Plant Biology

Engineering chloroplast development in rice through cell‐specific control of endogenous genetic circuits

(2021) Dong‐Yeon Lee et al.   PLANT BIOTECHNOLOGY JOURNAL

Nuclear encoded elongation factor EF-Tu is required for chloroplast development in rice grown under low-temperature conditions

(2021) Liang Cai et al.   Journal of Genetics and Genomics

Chloroplast development in green plant tissues: the interplay between light, hormone, and transcriptional regulation

(2021) Lee Cackett et al.   NEW PHYTOLOGIST

From Chloroplast Biogenesis to Chlorophyll Accumulation: The Interplay of Light and Hormones on Gene Expression in Camellia sinensis cv. Shuchazao Leaves

(2020) Linlin Liu et al.   Frontiers in Plant Science

Effects of exogenous methyl jasmonate on the synthesis of endogenous jasmonates and the regulation of photosynthesis in citrus

(2020) Xia Qiu et al.   PHYSIOLOGIA PLANTARUM

Primary leaf‐type ferredoxin 1 participates in photosynthetic electron transport and carbon assimilation in rice

(2020) Lei He et al.   PLANT JOURNAL

Protective roles of salicylic acid in maintaining integrity and functions of photosynthetic photosystems for alfalfa (Medicago sativa L.) tolerance to aluminum toxicity

(2020) Xiaoqing Cheng et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

white panicle 2 encoding thioredoxin z , regulates plastid RNA editing by interacting with multiple organellar RNA editing factors in rice

(2020) Yunlong Wang et al.   NEW PHYTOLOGIST

AP2/ERF Transcription Factor Regulatory Networks in Hormone and Abiotic Stress Responses in Arabidopsis

(2019) Zhouli Xie et al.   Frontiers in Plant Science

The birch GLK1 transcription factor mutant reveals new insights in chlorophyll biosynthesis and chloroplast development

(2019) Huixin Gang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Engineering the phototropin photocycle improves photoreceptor performance and plant biomass production

(2019) Jaynee E. Hart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid: biosynthesis, perception, and contributions to plant immunity

(2019) Yuelin Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

Abscisic acid dynamics, signaling, and functions in plants

(2019) Kong Chen et al.   Journal of Integrative Plant Biology

FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice

(2018) Lei He et al.   Journal of Integrative Plant Biology

White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice

(2017) Yusong Lv et al.   JOURNAL OF EXPERIMENTAL BOTANY

The RNA Editing Factor WSP1 Is Essential for Chloroplast Development in Rice

(2017) Zhiguo Zhang et al.   Molecular Plant

OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice

(2017) Jianpeng Tang et al.   PLANT MOLECULAR BIOLOGY

Retrograde Signals Navigate the Path to Chloroplast Development

(2017) Tamara Hernández-Verdeja et al.   PLANT PHYSIOLOGY

Editorial: Assembly of the Photosystem II Membrane-Protein Complex of Oxygenic Photosynthesis

(2017) Julian J. Eaton-Rye et al.   Frontiers in Plant Science

Salicylic Acid Alleviates the Adverse Effects of Salt Stress on Dianthus superbus (Caryophyllaceae) by Activating Photosynthesis, Protecting Morphological Structure, and Enhancing the Antioxidant System

(2017) Xiaohua Ma et al.   Frontiers in Plant Science

Impaired Magnesium Protoporphyrin IX Methyltransferase (ChlM) Impedes Chlorophyll Synthesis and Plant Growth in Rice

(2017) Zhaohai Wang et al.   Frontiers in Plant Science

Reliable Selection and Holistic Stability Evaluation of Reference Genes for Rice Under 22 Different Experimental Conditions

(2016) Zhaohai Wang et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.)

(2016) Weijun Ye et al.   MOLECULAR BREEDING

The Multifaceted Roles of HY5 in Plant Growth and Development

(2016) Sreeramaiah N. Gangappa et al.   Molecular Plant

WSL3, a component of the plastid-encoded plastid RNA polymerase, is essential for early chloroplast development in rice

(2016) Liwei Wang et al.   PLANT MOLECULAR BIOLOGY

The catalytic subunit of magnesium-protoporphyrin IX monomethyl ester cyclase forms a chloroplast complex to regulate chlorophyll biosynthesis in rice

(2016) Weiyi Kong et al.   PLANT MOLECULAR BIOLOGY

WHITE PANICLE1, a Val-tRNA Synthetase Regulating Chloroplast Ribosome Biogenesis in Rice, Is Essential for Early Chloroplast Development

(2016) Yunlong Wang et al.   PLANT PHYSIOLOGY

A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice

(2016) Fei Chen et al.   Scientific Reports

Insights into chloroplast biogenesis and development

(2015) Barry J. Pogson et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice

(2015) Yaolong Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Jasmonic acid carboxyl methyltransferase regulates development and herbivory-induced defense response in rice

(2015) Jinfeng Qi et al.   Journal of Integrative Plant Biology

Characterization and fine mapping of a light-dependent leaf lesion mimic mutant 1 in rice

(2015) Jing Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Mutation of FdC2 gene encoding a ferredoxin-like protein with C-terminal extension causes yellow-green leaf phenotype in rice

(2015) Chunmei Li et al.   PLANT SCIENCE

Oryza sativa Chloroplast Signal Recognition Particle 43 (OscpSRP43) Is Required for Chloroplast Development and Photosynthesis

(2015) Xiang-guang Lv et al.   PLoS One

Mutation of the riceASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death

(2014) D. Lin et al.   PLANT BIOLOGY

Young Leaf Chlorosis 2 encodes the stroma-localized heme oxygenase 2 which is required for normal tetrapyrrole biosynthesis in rice

(2014) Qingzhu Li et al.   PLANTA

Spatiotemporal signalling in plant development

(2013) Erin Sparks et al.   NATURE REVIEWS GENETICS

The ricefaded green leaflocus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions

(2013) Yasuhito Sakuraba et al.   PLANT JOURNAL

Loss-of-function of OsSTN8 suppresses the photosystem II core protein phosphorylation and interferes with the photosystem II repair mechanism in rice (Oryza sativa)

(2013) Krishna Nath et al.   PLANT JOURNAL

The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions

(2013) Jian Song et al.   PLANT MOLECULAR BIOLOGY

Rice Cytokinin GATA Transcription Factor1 Regulates Chloroplast Development and Plant Architecture

(2013) D. Hudson et al.   PLANT PHYSIOLOGY

A Rice Virescent-Yellow Leaf Mutant Reveals New Insights into the Role and Assembly of Plastid Caseinolytic Protease in Higher Plants

(2013) H. Dong et al.   PLANT PHYSIOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

SERE: Single-parameter quality control and sample comparison for RNA-Seq

(2012) Stefan K Schulze et al.   BMC GENOMICS

Highly sensitive and quantitative profiling of acidic phytohormones using derivatization approach coupled with nano-LC–ESI-Q-TOF-MS analysis

(2012) Ming-Luan Chen et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Post-translational control of tetrapyrrole biosynthesis in plants, algae, and cyanobacteria

(2012) O. Czarnecki et al.   JOURNAL OF EXPERIMENTAL BOTANY

The pathway of auxin biosynthesis in plants

(2012) Y. Mano et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functional characterization of ObgC in ribosome biogenesis during chloroplast development

(2012) Woo Young Bang et al.   PLANT JOURNAL

Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice

(2012) Kunneng Zhou et al.   PLANTA

RLIN1, encoding a putative coproporphyrinogen III oxidase, is involved in lesion initiation in rice

(2011) Changhui Sun et al.   Journal of Genetics and Genomics

Methyl jasmonate, gibberellic acid, and auxin affect transcription and transcript accumulation of chloroplast genes in barley

(2011) Yan O. Zubo et al.   JOURNAL OF PLANT PHYSIOLOGY

A plastid protein NUS1 is essential for build-up of the genetic system for early chloroplast development under cold stress conditions

(2011) Kensuke Kusumi et al.   PLANT JOURNAL

NOA1 Functions in a Temperature-Dependent Manner to Regulate Chlorophyll Biosynthesis and Rubisco Formation in Rice

(2011) Qiaosong Yang et al.   PLoS One

Chlorophyll-deficient mutants of Chlamydomonas reinhardtii that accumulate magnesium protoporphyrin IX

(2010) Linda Meinecke et al.   PLANT MOLECULAR BIOLOGY

Manipulation of Photoprotection to Improve Plant Photosynthesis

(2010) E. H. Murchie et al.   PLANT PHYSIOLOGY

Two complementary recessive genes in duplicated segments control etiolation in rice

(2010) Donghai Mao et al.   THEORETICAL AND APPLIED GENETICS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Defect in non-yellow coloring 3, an α/β hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice

(2009) Ryouhei Morita et al.   PLANT JOURNAL

Methyl Jasmonate Reduces Grain Yield by Mediating Stress Signals to Alter Spikelet Development in Rice

(2009) E. H. Kim et al.   PLANT PHYSIOLOGY

Rice Virescent3 and Stripe1 Encoding the Large and Small Subunits of Ribonucleotide Reductase Are Required for Chloroplast Biogenesis during Early Leaf Development

(2009) S.-C. Yoo et al.   PLANT PHYSIOLOGY

Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid nuclear signaling is not due to Mg-protoporphyrin IX accumulation

(2008) M. Moulin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The steady-state level of Mg-protoporphyrin IX is not a determinant of plastid-to-nucleus signaling in Arabidopsis

(2008) N. Mochizuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA