Single-cell analysis reveals specific neuronal transition during mouse corticogenesis

TEDD: a database of temporal gene expression patterns during multiple developmental periods in human and model organisms

(2022) Ziheng Zhou et al.   NUCLEIC ACIDS RESEARCH

Progenitor cell diversity in the developing mouse neocortex

(2021) Xiangbin Ruan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inference and analysis of cell-cell communication using CellChat

(2021) Suoqin Jin et al.   Nature Communications

Molecular logic of cellular diversification in the mouse cerebral cortex

(2021) Daniela J. Di Bella et al.   NATURE

The Role of Neurod Genes in Brain Development, Function, and Disease

(2021) Svetlana Tutukova et al.   Frontiers in Molecular Neuroscience

A multimodal cell census and atlas of the mammalian primary motor cortex

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Single-cell delineation of lineage and genetic identity in the mouse brain

(2021) Rachel C. Bandler et al.   NATURE

Generalizing RNA velocity to transient cell states through dynamical modeling

(2020) Volker Bergen et al.   NATURE BIOTECHNOLOGY

CYCLIN-B1/2 and -D1 act in opposition to coordinate cortical progenitor self-renewal and lineage commitment

(2020) Daniel W. Hagey et al.   Nature Communications

Transcription factor expression defines subclasses of developing projection neurons highly similar to single-cell RNA-seq subtypes

(2020) Whitney E. Heavner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell transcriptome analysis reveals cell lineage specification in temporal-spatial patterns in human cortical development

(2020) Xiaoying Fan et al.   Science Advances

Single-cell transcriptomic analysis of mouse neocortical development

(2019) Lipin Loo et al.   Nature Communications

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation

(2019) Damon Polioudakis et al.   NEURON

Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction

(2019) Aritra Bhattacherjee et al.   Nature Communications

Distinct roles for the cell adhesion molecule Contactin2 in the development and function of neural circuits in zebrafish

(2018) Suman Gurung et al.   MECHANISMS OF DEVELOPMENT

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex

(2018) Suijuan Zhong et al.   NATURE

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

The Epigenetic State of PRDM16-Regulated Enhancers in Radial Glia Controls Cortical Neuron Position

(2018) José-Manuel Baizabal et al.   NEURON

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

Developmental diversification of cortical inhibitory interneurons

(2018) Christian Mayer et al.   NATURE

Neural Stem Cells Behave as a Functional Niche for the Maturation of Newborn Neurons through the Secretion of PTN

(2018) Changyong Tang et al.   NEURON

Integrative functional genomic analysis of human brain development and neuropsychiatric risks

(2018) Mingfeng Li et al.   SCIENCE

Spatiotemporal transcriptomic divergence across human and macaque brain development

(2018) Ying Zhu et al.   SCIENCE

From top to bottom: midkine and pleiotrophin as emerging players in immune regulation

(2017) Noah Sorrelle et al.   JOURNAL OF LEUKOCYTE BIOLOGY

SCENIC: single-cell regulatory network inference and clustering

(2017) Sara Aibar et al.   NATURE METHODS

Single-cell mRNA quantification and differential analysis with Census

(2017) Xiaojie Qiu et al.   NATURE METHODS

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex

(2017) Tomasz J. Nowakowski et al.   SCIENCE

TGF-β Family Signaling in Neural and Neuronal Differentiation, Development, and Function

(2017) Emily A. Meyers et al.   Cold Spring Harbor Perspectives in Biology

Developmental Emergence of Adult Neural Stem Cells as Revealed by Single-Cell Transcriptional Profiling

(2017) Scott A. Yuzwa et al.   Cell Reports

The immunoglobulin-like superfamily member IGSF3 is a developmentally regulated protein that controls neuronal morphogenesis

(2016) Alessia Usardi et al.   Developmental Neurobiology

Cannabinoid receptor 1 (CNR1) gene variant moderates neural index of cognitive disruption during nicotine withdrawal

(2016) D. E. Evans et al.   GENES BRAIN AND BEHAVIOR

The Cellular and Molecular Landscapes of the Developing Human Central Nervous System

(2016) John C. Silbereis et al.   NEURON

Corrigendum: Molecular Pathways Underlying Projection Neuron Production and Migration during Cerebral Cortical Development

(2016) Chiaki Ohtaka-Maruyama et al.   Frontiers in Neuroscience

A survey of human brain transcriptome diversity at the single cell level

(2015) Spyros Darmanis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Switching modes in corticogenesis: mechanisms of neuronal subtype transitions and integration in the cerebral cortex

(2015) Kenichi Toma et al.   Frontiers in Neuroscience

Molecular Pathways Underlying Projection Neuron Production and Migration during Cerebral Cortical Development

(2015) Chiaki Ohtaka-Maruyama et al.   Frontiers in Neuroscience

Pleiotrophin Exerts Its Migration and Invasion Effect through the Neuropilin-1 Pathway

(2015) Rania Elahouel et al.   NEOPLASIA

PTN signaling: Components and mechanistic insights in human ovarian cancer

(2014) Geetika Sethi et al.   MOLECULAR CARCINOGENESIS

FLRT Structure: Balancing Repulsion and Cell Adhesion in Cortical and Vascular Development

(2014) Elena Seiradake et al.   NEURON

A critical time window for dopamine actions on the structural plasticity of dendritic spines

(2014) S. Yagishita et al.   SCIENCE

Molecular logic of neocortical projection neuron specification, development and diversity

(2013) Luciano Custo Greig et al.   NATURE REVIEWS NEUROSCIENCE

Cortical Evolution: Judge the Brain by Its Cover

(2013) Daniel H. Geschwind et al.   NEURON

Role of motoneuron-derived neurotrophin 3 in survival and axonal projection of sensory neurons during neural circuit formation

(2012) N. Usui et al.   DEVELOPMENT

Interplay between αvβ3Integrin and Nucleolin Regulates Human Endothelial and Glioma Cell Migration

(2012) Marina Koutsioumpa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Semaphorin3A Regulates Neuronal Polarization by Suppressing Axon Formation and Promoting Dendrite Growth

(2011) Maya Shelly et al.   NEURON

Novel Subtype-Specific Genes Identify Distinct Subpopulations of Callosal Projection Neurons

(2009) B. J. Molyneaux et al.   JOURNAL OF NEUROSCIENCE