TEDD: a database of temporal gene expression patterns during multiple developmental periods in human and model organisms

Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays

(2022) Ao Chen et al.   CELL

Mapping the developing human immune system across organs

(2022) Chenqu Suo et al.   SCIENCE

Single-cell roadmap of human gonadal development

(2022) Luz Garcia-Alonso et al.   NATURE

Systematic identification of cell-fate regulatory programs using a single-cell atlas of mouse development

(2022) Lijiang Fei et al.   NATURE GENETICS

Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia

(2021) Ugomma C. Eze et al.   NATURE NEUROSCIENCE

Integrated analysis of multimodal single-cell data

(2021) Yuhan Hao et al.   CELL

Molecular logic of cellular diversification in the mouse cerebral cortex

(2021) Daniela J. Di Bella et al.   NATURE

A single-cell atlas of chromatin accessibility in the human genome

(2021) Kai Zhang et al.   CELL

CDCP: a visualization and analyzing platform for single-cell datasets

(2021) Yuejiao Li et al.   Journal of Genetics and Genomics

DISCO: a database of Deeply Integrated human Single-Cell Omics data

(2021) Mengwei Li et al.   NUCLEIC ACIDS RESEARCH

SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues

(2021) Changlu Qi et al.   NUCLEIC ACIDS RESEARCH

CancerSCEM: a database of single-cell expression map across various human cancers

(2021) Jingyao Zeng et al.   NUCLEIC ACIDS RESEARCH

Mouse and human share conserved transcriptional programs for interneuron development

(2021) Yingchao Shi et al.   SCIENCE

Evolutionary epigenomic analyses in mammalian early embryos reveal species-specific innovations and conserved principles of imprinting

(2021) Xukun Lu et al.   Science Advances

Construction of a human cell landscape at single-cell level

(2020) Xiaoping Han et al.   NATURE

SC2disease: a manually curated database of single-cell transcriptome for human diseases

(2020) Tianyi Zhao et al.   NUCLEIC ACIDS RESEARCH

A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples

(2020) Wanqiu Chen et al.   NATURE BIOTECHNOLOGY

Decoding human fetal liver haematopoiesis

(2019) Dorin-Mirel Popescu et al.   NATURE

Fast, sensitive and accurate integration of single-cell data with Harmony

(2019) Ilya Korsunsky et al.   NATURE METHODS

Mapping the Mouse Cell Atlas by Microwell-Seq

(2018) Xiaoping Han et al.   CELL

Mapping molecular landmarks of human skeletal ontogeny and pluripotent stem cell-derived articular chondrocytes

(2018) Gabriel B. Ferguson et al.   Nature Communications

Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

(2018) Thorsten Boroviak et al.   DEVELOPMENT

Hippo Signaling in the Liver Regulates Organ Size, Cell Fate, and Carcinogenesis

(2017) Sachin H. Patel et al.   GASTROENTEROLOGY

The Human Cell Atlas

(2017) Aviv Regev et al.   eLife

Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells

(2016) Gioele La Manno et al.   CELL

Alpha-foetoprotein (AFP): A multi-purpose marker in hepatocellular carcinoma

(2016) Chloé Sauzay et al.   CLINICA CHIMICA ACTA

Long noncoding RNA H19 inhibits the proliferation of fetal liver cells and the Wnt signaling pathway

(2016) Shaobing Wang et al.   FEBS LETTERS

ENCODE data at the ENCODE portal

(2015) Cricket A. Sloan et al.   NUCLEIC ACIDS RESEARCH

Hippo Pathway Activity Influences Liver Cell Fate

(2014) Dean Yimlamai et al.   CELL

Conservation and divergence in the transcriptional programs of the human and mouse immune systems

(2013) T. Shay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Expression pattern of thymosin beta 4 in the adult human liver

(2011) S. Nemolato et al.   EUROPEAN JOURNAL OF HISTOCHEMISTRY

Different Thymosin Beta 4 Immunoreactivity in Foetal and Adult Gastrointestinal Tract

(2010) Sonia Nemolato et al.   PLoS One