Genome-wide chemical mapping of O-GlcNAcylated proteins in Drosophila melanogaster

DrosophilaO-GlcNAcase Deletion Globally Perturbs ChromatinO-GlcNAcylation

(2016) Ilhan Akan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Inducible DamID systems for genomic mapping of chromatin proteins inDrosophila

(2016) Alexey V. Pindyurin et al.   NUCLEIC ACIDS RESEARCH

Protein-Specific Imaging of O-GlcNAcylation in Single Cells

(2015) Wei Lin et al.   CHEMBIOCHEM

A critical perspective of the diverse roles of O-GlcNAc transferase in chromatin

(2015) Maria Cristina Gambetta et al.   CHROMOSOMA

A little sugar goes a long way: The cell biology of O-GlcNAc

(2015) Michelle R. Bond et al.   JOURNAL OF CELL BIOLOGY

Reproducibility: Standardize antibodies used in research

(2015) Andrew Bradbury et al.   NATURE

O-GlcNAc occurs cotranslationally to stabilize nascent polypeptide chains

(2015) Yanping Zhu et al.   Nature Chemical Biology

Dual functionality ofO-GlcNAc transferase is required forDrosophiladevelopment

(2015) Daniel Mariappa et al.   Open Biology

Click Chemistry in Complex Mixtures: Bioorthogonal Bioconjugation

(2014) Craig S. McKay et al.   CHEMISTRY & BIOLOGY

O-GlcNAcylation Prevents Aggregation of the Polycomb Group Repressor Polyhomeotic

(2014) Maria Cristina Gambetta et al.   DEVELOPMENTAL CELL

Changes in Metabolic Chemical Reporter Structure Yield a Selective Probe of O-GlcNAc Modification

(2014) Kelly N. Chuh et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

HP1a: a structural chromosomal protein regulating transcription

(2014) Joel C. Eissenberg et al.   TRENDS IN GENETICS

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

Insights intoO-LinkedN-Acetylglucosamine ([0-9]O-GlcNAc) Processing and Dynamics through Kinetic Analysis ofO-GlcNAc Transferase andO-GlcNAcase Activity on Protein Substrates

(2012) David L. Shen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Profiling Genome-Wide Chromatin Methylation with Engineered Posttranslation Apparatus within Living Cells

(2012) Rui Wang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Quantitative Assessment of Chromatin Immunoprecipitation Grade Antibodies Directed against Histone Modifications Reveals Patterns of Co-occurring Marks on Histone Protein Molecules

(2012) Sally E. Peach et al.   MOLECULAR & CELLULAR PROTEOMICS

Genome-wide polycomb target gene prediction in Drosophila melanogaster

(2012) Jia Zeng et al.   NUCLEIC ACIDS RESEARCH

Exploring Massive, Genome Scale Datasets with the GenometriCorr Package

(2012) Alexander Favorov et al.   PLoS Computational Biology

O-GlcNAc Transferase Catalyzes Site-Specific Proteolysis of HCF-1

(2011) Francesca Capotosti et al.   CELL

A cis-regulatory map of the Drosophila genome

(2011) Nicolas Nègre et al.   NATURE

Drosophila melanogaster dHCF Interacts with both PcG and TrxG Epigenetic Regulators

(2011) Sara Rodriguez-Jato et al.   PLoS One

Metabolic cross-talk allows labeling of O-linked  -N-acetylglucosamine-modified proteins via the N-acetylgalactosamine salvage pathway

(2011) M. Boyce et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

(2010) Chun-Xiao Song et al.   NATURE BIOTECHNOLOGY

Glycopeptide-specific monoclonal antibodies suggest new roles for O-GlcNAc

(2010) Chin Fen Teo et al.   Nature Chemical Biology

CEAS: cis-regulatory element annotation system

(2009) Hyunjin Shin et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Drosophila O-GlcNAc transferase (OGT) is encoded by the Polycomb group (PcG) gene, super sex combs (sxc)

(2009) D. A. R. Sinclair et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping of O-linkedβ-N-acetylglucosamine modification sites in key contractile proteins of rat skeletal muscle

(2009) Julie Hédou et al.   PROTEOMICS

Essential Role of the Glycosyltransferase Sxc/Ogt in Polycomb Repression

(2009) Maria Cristina Gambetta et al.   SCIENCE

Talking to chromatin: post-translational modulation of polycomb group function

(2009) Hanneke EC Niessen et al.   Epigenetics & Chromatin

Functional Anatomy of Polycomb and Trithorax Chromatin Landscapes in Drosophila Embryos

(2009) Bernd Schuettengruber et al.   PLOS BIOLOGY

Azido‐BODIPY Acid Reveals Quantitative Staudinger–Bertozzi Ligation in Two‐Step Activity‐Based Proteasome Profiling

(2008) Martijn Verdoes et al.   CHEMBIOCHEM

Dynamic Regulation by Polycomb Group Protein Complexes Controls Pattern Formation and the Cell Cycle in Drosophila

(2008) Katarzyna Oktaba et al.   DEVELOPMENTAL CELL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY