Genome-wide identification of overexpression and downregulation gene targets based on the sum of covariances of the outgoing reaction fluxes
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Title
Genome-wide identification of overexpression and downregulation gene targets based on the sum of covariances of the outgoing reaction fluxes
Authors
Keywords
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Journal
Cell Systems
Volume -, Issue -, Pages -
Publisher
Elsevier BV
Online
2023-11-06
DOI
10.1016/j.cels.2023.10.005
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Note: Only part of the references are listed.- Reconstructing organisms in silico: genome-scale models and their emerging applications
- (2020) Xin Fang et al. NATURE REVIEWS MICROBIOLOGY
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