Plants acquired mitochondrial linear plasmids horizontally from fungi likely during the conquest of land

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

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Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota

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UFBoot2: Improving the Ultrafast Bootstrap Approximation

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ModelFinder: fast model selection for accurate phylogenetic estimates

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Polintons, virophages and transpovirons: a tangled web linking viruses, transposons and immunity

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Linear Plasmids and the Rate of Sequence Evolution in Plant Mitochondrial Genomes

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GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

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The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses

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Linear plasmids in plant mitochondria: Peaceful coexistences or malicious invasions?

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