pySODM: Simulating and optimizing dynamical models in Python 3

A Stochastic Mobility-Driven spatially explicit SEIQRD COVID-19 model with VOCs, seasonality, and vaccines

(2023) Tijs W. Alleman et al.   APPLIED MATHEMATICAL MODELLING

A protocol for dynamic model calibration

(2021) Alejandro F Villaverde et al.   BRIEFINGS IN BIOINFORMATICS

Assessing the effects of non-pharmaceutical interventions on SARS-CoV-2 transmission in Belgium by means of an extended SEIQRD model and public mobility data

(2021) Tijs W. Alleman et al.   Epidemics

SciPy 1.0: fundamental algorithms for scientific computing in Python

(2020) Pauli Virtanen et al.   NATURE METHODS

Age-specific vaccination coverage estimates for influenza, human papillomavirus and measles containing vaccines from seven population-based healthcare databases from four EU countries – The ADVANCE project

(2020) Toon Braeye et al.   VACCINE

Consultations for Influenza-Like Illness in Primary Care in The Netherlands: A Regression Approach

(2020) F. Christiaan K. Dolk et al.   VALUE IN HEALTH

Statistical Inference for Partially Observed Markov Processes via theRPackagepomp

(2016) Aaron A. King et al.   Journal of Statistical Software

emcee: The MCMC Hammer

(2013) Daniel Foreman-Mackey et al.   PUBLICATIONS OF THE ASTRONOMICAL SOCIETY OF THE PACIFIC

A review on the clinical spectrum and natural history of human influenza

(2012) Warunee Punpanich et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Statistical inference for stochastic simulation models - theory and application

(2011) Florian Hartig et al.   ECOLOGY LETTERS

Ensemble samplers with affine invariance

(2010) Jonathan Goodman et al.   Communications in Applied Mathematics and Computational Science

The construction of next-generation matrices for compartmental epidemic models

(2009) O. Diekmann et al.   Journal of the Royal Society Interface

Social Contacts and Mixing Patterns Relevant to the Spread of Infectious Diseases

(2008) Joël Mossong et al.   PLOS MEDICINE