The pleiotropic functions of Pri smORF peptides synchronize leg development regulators

Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteins

(2023) Thomas F. Martinez et al.   Cell Metabolism

In Depth Exploration of the Alternative Proteome of Drosophila melanogaster

(2022) Bertrand Fabre et al.   Frontiers in Cell and Developmental Biology

Mapping subcellular localizations of unannotated microproteins and alternative proteins with MicroID

(2022) Zhenkun Na et al.   MOLECULAR CELL

Standardized annotation of translated open reading frames

(2022) Jonathan M. Mudge et al.   NATURE BIOTECHNOLOGY

Mitochondrial microproteins link metabolic cues to respiratory chain biogenesis

(2022) Chao Liang et al.   Cell Reports

Two neuronal peptides encoded from a single transcript regulate mitochondrial complex III in Drosophila

(2022) Justin A Bosch et al.   eLife

Revisiting sORFs: overcoming challenges to identify and characterize functional microproteins

(2021) Dörte Schlesinger et al.   FEBS Journal

polished rice mediates ecdysone‐dependent control of Drosophila embryonic organogenesis

(2021) Yuki Taira et al.   GENES TO CELLS

Pri smORF Peptides Are Wide Mediators of Ecdysone Signaling, Contributing to Shape Spatiotemporal Responses

(2021) Azza Dib et al.   Frontiers in Genetics

Unraveling the hidden role of a uORF-encoded peptide as a kinase inhibitor of PKCs

(2021) Divya Ram Jayaram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The dark proteome: translation from noncanonical open reading frames

(2021) Bradley W. Wright et al.   TRENDS IN CELL BIOLOGY

Pervasive functional translation of noncanonical human open reading frames

(2020) Jin Chen et al.   SCIENCE

A micropeptide encoded by lncRNA MIR155HG suppresses autoimmune inflammation via modulating antigen presentation

(2020) Liman Niu et al.   Science Advances

Steroid‐dependent switch of OvoL/Shavenbaby controls self‐renewal versus differentiation of intestinal stem cells

(2020) Sandy Al Hayek et al.   EMBO JOURNAL

The mlpt/Ubr3/Svb module comprises an ancient developmental switch for embryonic patterning

(2019) Suparna Ray et al.   eLife

The Translational Landscape of the Human Heart

(2019) Sebastiaan van Heesch et al.   CELL

Regulation of Notch output dynamics via specific E(spl)-HLH factors during bristle patterning in Drosophila

(2019) Lydie Couturier et al.   Nature Communications

Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution

(2018) Sebastian Kittelmann et al.   PLoS Genetics

cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg

(2018) Susan Newcomb et al.   PLoS Genetics

The translation of non-canonical open reading frames controls mucosal immunity

(2018) Ruaidhrí Jackson et al.   NATURE

Shavenbaby and Yorkie mediate Hippo signaling to protect adult stem cells from apoptosis

(2018) Jérôme Bohère et al.   Nature Communications

Differential analysis of RNA-seq incorporating quantification uncertainty

(2017) Harold Pimentel et al.   NATURE METHODS

Classification and function of small open reading frames

(2017) Juan-Pablo Couso et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle

(2016) B. R. Nelson et al.   SCIENCE

Molecular and cellular mechanisms involved in leg joint morphogenesis

(2016) Magali Suzanne   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance

(2015) Douglas M. Anderson et al.   CELL

Pri sORF peptides induce selective proteasome-mediated protein processing

(2015) J. Zanet et al.   SCIENCE

Ubr3 E3 ligase regulates apoptosis by controlling the activity of DIAP1 in Drosophila

(2014) Q Huang et al.   CELL DEATH AND DIFFERENTIATION

Diversity and dynamics of the Drosophila transcriptome

(2014) James B. Brown et al.   NATURE

Pri peptides are mediators of ecdysone for the temporal control of development

(2014) Hélène Chanut-Delalande et al.   NATURE CELL BIOLOGY

The bHLH-PAS Transcription Factor Dysfusion Regulates Tarsal Joint Formation in Response to Notch Activity during Drosophila Leg Development

(2014) Sergio Córdoba et al.   PLoS Genetics

Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames

(2013) E. G. Magny et al.   SCIENCE

Identification and Properties of 1,119 Candidate LincRNA Loci in the Drosophila melanogaster Genome

(2012) Robert S. Young et al.   Genome Biology and Evolution

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

(2011) M. F. Lin et al.   BIOINFORMATICS

Tarsal-less peptides control Notch signalling through the Shavenbaby transcription factor

(2011) Jose I. Pueyo et al.   DEVELOPMENTAL BIOLOGY

Progressive tarsal patterning in the Drosophila by temporally dynamic regulation of transcription factor genes

(2011) Kohei Natori et al.   DEVELOPMENTAL BIOLOGY

Inactivation of Both foxo and reaper Promotes Long-Term Adult Neurogenesis in Drosophila

(2010) Sarah E. Siegrist et al.   CURRENT BIOLOGY

Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis

(2010) T. Kondo et al.   SCIENCE

Self-modulation of Notch signaling during ommatidial development via the Roughened eye transcriptional repressor

(2008) D. del Alamo et al.   DEVELOPMENT

The 11-aminoacid long Tarsal-less peptides trigger a cell signal in Drosophila leg development

(2008) Jose Ignacio Pueyo et al.   DEVELOPMENTAL BIOLOGY