Five families of diverse DNA viruses comprehensively restructure the nucleus

How Epstein-Barr Virus Induces the Reorganization of Cellular Chromatin

(2023) Quincy Rosemarie et al.   mBio

EBV Reactivation from Latency Is a Degrading Experience for the Host

(2023) Alejandro Casco et al.   Viruses-Basel

An estimate of the deepest branches of the tree of life from ancient vertically-evolving genes

(2022) Edmund RR Moody et al.   eLife

Human cytomegalovirus lytic infection inhibits replication-dependent histone synthesis and requires stem loop binding protein function

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Herpesvirus Replication Compartments: Dynamic Biomolecular Condensates?

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Human cytomegalovirus forms phase-separated compartments at viral genomes to facilitate viral replication

(2022) Enrico Caragliano et al.   Cell Reports

Parvovirus nonstructural protein 2 interacts with chromatin-regulating cellular proteins

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A mitotic chromatin phase transition prevents perforation by microtubules

(2022) Maximilian W. G. Schneider et al.   NATURE

Epstein-Barr virus inactivates the transcriptome and disrupts the chromatin architecture of its host cell in the first phase of lytic reactivation

(2021) Alexander Buschle et al.   NUCLEIC ACIDS RESEARCH

Histone Modifications in Papillomavirus Virion Minichromosomes

(2021) Samuel S. Porter et al.   mBio

Plant DNA polymerases α and δ mediate replication of geminiviruses

(2021) Mengshi Wu et al.   Nature Communications

H3K4me3 histone modification in baculovirus-infected silkworm cells

(2021) Keisuke Shoji et al.   VIRUS GENES

The Ins and Outs of Herpesviral Capsids: Divergent Structures and Assembly Mechanisms across the Three Subfamilies

(2021) Elizabeth B. Draganova et al.   Viruses-Basel

Global Organization and Proposed Megataxonomy of the Virus World

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Geminivirus Resistance: A Minireview

(2020) Kayla Beam et al.   Frontiers in Plant Science

Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation

(2019) David Trombley McSwiggen et al.   eLife

Nucleocapsid Assembly of Baculoviruses

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Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

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A new class of disordered elements controls DNA replication through initiator self-assembly

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Organization of Chromatin by Intrinsic and Regulated Phase Separation

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Four-dimensional analyses show that replication compartments are clonal factories in which Epstein–Barr viral DNA amplification is coordinated

(2019) Thejaswi Nagaraju et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RnaSeqSampleSize: real data based sample size estimation for RNA sequencing

(2018) Shilin Zhao et al.   BMC BIOINFORMATICS

Real-time visualization and quantification of human Cytomegalovirus replication in living cells using the ANCHOR DNA labeling technology.

(2018) Bernard Mariamé et al.   JOURNAL OF VIROLOGY

In vivo labelling of adenovirus DNA identifies chromatin anchoring and biphasic genome replication.

(2018) Tetsuro Komatsu et al.   JOURNAL OF VIROLOGY

The 3.3 Å structure of a plant geminivirus using cryo-EM

(2018) Emma L. Hesketh et al.   Nature Communications

ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells

(2017) Horng D. Ou et al.   SCIENCE

The adenovirus major core protein VII is dispensable for virion assembly but is essential for lytic infection

(2017) Philomena Ostapchuk et al.   PLoS Pathogens

Parvovirus B19 NS1 protein induces cell cycle arrest at G2-phase by activating the ATR-CDC25C-CDK1 pathway

(2017) Peng Xu et al.   PLoS Pathogens

The replication initiator protein of a geminivirus interacts with host monoubiquitination machinery and stimulates transcription of the viral genome

(2017) Nirbhay Kumar Kushwaha et al.   PLoS Pathogens

The vaccinia virus K7 protein promotes histone methylation associated with heterochromatin formation

(2017) Wondimagegnehu M. Teferi et al.   PLoS One

A core viral protein binds host nucleosomes to sequester immune danger signals

(2016) Daphne C. Avgousti et al.   NATURE

Chromatin Modulation of Herpesvirus Lytic Gene Expression: Managing Nucleosome Density and Heterochromatic Histone Modifications

(2016) Thomas M. Kristie   mBio

Serological and molecular epidemiology of canine adenovirus type 1 in red foxes (Vulpes vulpes) in the United Kingdom

(2016) David Walker et al.   Scientific Reports

Replication of an Autonomous Human Parvovirus in Non-dividing Human Airway Epithelium Is Facilitated through the DNA Damage and Repair Pathways

(2016) Xuefeng Deng et al.   PLoS Pathogens

An Epstein-Barr Virus-Encoded Protein Complex Requires an Origin of Lytic Replication In Cis to Mediate Late Gene Transcription

(2016) Reza Djavadian et al.   PLoS Pathogens

Human parvovirus B19: a mechanistic overview of infection and DNA replication

(2015) Yong Luo et al.   Future Virology

Reconstitution of mitotic chromatids with a minimum set of purified factors

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Baculoviruses and nucleosome management

(2015) Loy E. Volkman   VIROLOGY

Geminivirus-encoded TrAP suppressor inhibits the histone methyltransferase SUVH4/KYP to counter host defense

(2015) Claudia Castillo-González et al.   eLife

Liquid-Liquid Phase Separation in Biology

(2014) Anthony A. Hyman et al.   Annual Review of Cell and Developmental Biology

Identification of Herpesvirus Proteins That Contribute to G1/S Arrest

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Epigenetic regulation of EBV persistence and oncogenesis

(2014) Italo Tempera et al.   SEMINARS IN CANCER BIOLOGY

Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel

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Epstein-Barr Viral Productive Amplification Reprograms Nuclear Architecture, DNA Replication, and Histone Deposition

(2013) Ya-Fang Chiu et al.   Cell Host & Microbe

New histone supply regulates replication fork speed and PCNA unloading

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Geminiviruses: masters at redirecting and reprogramming plant processes

(2013) Linda Hanley-Bowdoin et al.   NATURE REVIEWS MICROBIOLOGY

Adenovirus DNA Replication

(2013) R. C. Hoeben et al.   Cold Spring Harbor Perspectives in Biology

Herpes Simplex Viruses: Mechanisms of DNA Replication

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Virion Assembly Factories in the Nucleus of Polyomavirus-Infected Cells

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Human Cytomegalovirus UL44 Concentrates at the Periphery of Replication Compartments, the Site of Viral DNA Synthesis

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Chromatin structure of adenovirus DNA throughout infection

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Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes

(2011) C. P. Brangwynne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parvovirus infection-induced cell death and cell cycle arrest

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Specificity of Baculovirus P6.9 Basic DNA-Binding Proteins and Critical Role of the C Terminus in Virion Formation

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Atomic Structure of Human Adenovirus by Cryo-EM Reveals Interactions Among Protein Networks

(2010) H. Liu et al.   SCIENCE

Chromosome Territories

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Cassava mosaic geminiviruses: actual knowledge and perspectives

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Parvovirus Induced Alterations in Nuclear Architecture and Dynamics

(2009) Teemu O. Ihalainen et al.   PLoS One

Adenoviruses: update on structure and function

(2008) W. C. Russell   JOURNAL OF GENERAL VIROLOGY

Nuclear Marginalization of Host Cell Chromatin Associated with Expansion of Two Discrete Virus-Induced Subnuclear Compartments during Baculovirus Infection

(2008) T. Nagamine et al.   JOURNAL OF VIROLOGY

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

(2008) Lars Guelen et al.   NATURE

Adenovirus Small e1a Alters Global Patterns of Histone Modification

(2008) G. A. Horwitz et al.   SCIENCE

Recruitment to the Nuclear Periphery Can Alter Expression of Genes in Human Cells

(2008) Lee E. Finlan et al.   PLoS Genetics

Apoptosis: controlled demolition at the cellular level

(2007) Rebecca C. Taylor et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY