Multiple light signaling pathways control solar tracking in sunflowers

Mechanotransduction in the spotlight of mechano-sensitive channels

(2022) Marjorie Guichard et al.   CURRENT OPINION IN PLANT BIOLOGY

ABP1–TMK auxin perception for global phosphorylation and auxin canalization

(2022) Jiří Friml et al.   NATURE

How Mechanical Forces Shape Plant Organs

(2021) Duy-Chi Trinh et al.   CURRENT BIOLOGY

Stem bending generates electrical response in poplar

(2021) Erwan Tinturier et al.   PHYSIOLOGIA PLANTARUM

Cryptochromes are the dominant photoreceptors mediating heliotropic responses of Arabidopsis inflorescences

(2021) Alejandro Miguel Serrano et al.   PLANT CELL AND ENVIRONMENT

Cell surface and intracellular auxin signalling for H+ fluxes in root growth

(2021) Lanxin Li et al.   NATURE

TMK-based cell-surface auxin signalling activates cell-wall acidification

(2021) Wenwei Lin et al.   NATURE

RNA Editing and Its Roles in Plant Organelles

(2021) Wei Hao et al.   Frontiers in Genetics

Light Perception: A Matter of Time

(2020) Sabrina E. Sanchez et al.   Molecular Plant

Local and Systemic Effects of Brassinosteroid Perception in Developing Phloem

(2020) Moritz Graeff et al.   CURRENT BIOLOGY

Microtubule Response to Tensile Stress Is Curbed by NEK6 to Buffer Growth Variation in the Arabidopsis Hypocotyl

(2020) Shogo Takatani et al.   CURRENT BIOLOGY

Brassinosteroids facilitate xylem differentiation and wood formation in tomato

(2019) Jinsu Lee et al.   PLANTA

Plant photoreceptors: Multi-functional sensory proteins and their signaling networks

(2019) Inyup Paik et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Circadian Rhythms in Plants

(2019) Nicky Creux et al.   Cold Spring Harbor Perspectives in Biology

Posture control in land plants: growth, position sensing, proprioception, balance, and elasticity

(2019) Bruno Moulia et al.   JOURNAL OF EXPERIMENTAL BOTANY

Are microtubules tension sensors?

(2019) Olivier Hamant et al.   Nature Communications

DiscoRhythm: an easy-to-use web application and R package for discovering rhythmicity

(2019) Matthew Carlucci et al.   BIOINFORMATICS

Functional conservation of Arabidopsis LNG1 in tobacco relating to leaf shape change by increasing longitudinal cell elongation by overexpression

(2018) Young Koung Lee et al.   Genes & Genomics

Rewiring of auxin signaling under persistent shade

(2018) Ornella Pucciariello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diurnal transcriptome atlas of a primate across major neural and peripheral tissues

(2018) Ludovic S. Mure et al.   SCIENCE

Space–time analysis of gravitropism in etiolated Arabidopsis hypocotyls using bioluminescence imaging of the IAA19 promoter fusion with a destabilized luciferase reporter

(2017) Kotaro T. Yamamoto et al.   JOURNAL OF PLANT RESEARCH

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Shining Light on the Function of NPH3/RPT2-Like Proteins in Phototropin Signaling

(2017) John M. Christie et al.   PLANT PHYSIOLOGY

Shade Promotes Phototropism through Phytochrome B-Controlled Auxin Production

(2016) Anupama Goyal et al.   CURRENT BIOLOGY

Evolutionary aspects of plant photoreceptors

(2016) Fay-Wei Li et al.   JOURNAL OF PLANT RESEARCH

How do plants read their own shapes?

(2016) Olivier Hamant et al.   NEW PHYTOLOGIST

How do sunflowers follow the Sun—and to what end?

(2016) Winslow R. Briggs   SCIENCE

Circadian regulation of sunflower heliotropism, floral orientation, and pollinator visits

(2016) Hagop S. Atamian et al.   SCIENCE

Into the Evening: Complex Interactions in the Arabidopsis Circadian Clock

(2016) He Huang et al.   TRENDS IN GENETICS

Domestication selected for deceleration of the circadian clock in cultivated tomato

(2015) Niels A Müller et al.   NATURE GENETICS

Integrating circadian dynamics with physiological processes in plants

(2015) Kathleen Greenham et al.   NATURE REVIEWS GENETICS

A circadian oscillator in the fungusBotrytis cinerearegulates virulence when infectingArabidopsis thaliana

(2015) Montserrat A. Hevia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The UV-B Photoreceptor UVR8: From Structure to Physiology

(2014) G. I. Jenkins   PLANT CELL

Phototropism: Growing towards an Understanding of Plant Movement

(2014) E. Liscum et al.   PLANT CELL

SAUR Inhibition of PP2C-D Phosphatases Activates Plasma Membrane H+-ATPases to Promote Cell Expansion in Arabidopsis

(2014) A. K. Spartz et al.   PLANT CELL

Turning heads: The biology of solar tracking in sunflower

(2014) Joshua P. Vandenbrink et al.   PLANT SCIENCE

Strengths and Limitations of Period Estimation Methods for Circadian Data

(2014) Tomasz Zielinski et al.   PLoS One

Cosinor-based rhythmometry

(2014) Germaine Cornelissen   Theoretical Biology and Medical Modelling

Shade avoidance: phytochrome signalling and other aboveground neighbour detection cues

(2013) Ronald Pierik et al.   JOURNAL OF EXPERIMENTAL BOTANY

Daily Changes in the Competence for Photo- and Gravitropic Response by Potato Plantlets

(2013) D. Vinterhalter et al.   JOURNAL OF PLANT GROWTH REGULATION

The bHLH proteins BEE and BIM positively modulate the shade avoidance syndrome in Arabidopsis seedlings

(2013) Nicolás Cifuentes-Esquivel et al.   PLANT JOURNAL

Circadian Rhythms of Sense and Antisense Transcription in Sugarcane, a Highly Polyploid Crop

(2013) Carlos Takeshi Hotta et al.   PLoS One

Shoot phototropism in higher plants: New light through old concepts

(2012) John M. Christie et al.   AMERICAN JOURNAL OF BOTANY

Evolution of the ARF Gene Family in Land Plants: Old Domains, New Tricks

(2012) Cédric Finet et al.   MOLECULAR BIOLOGY AND EVOLUTION

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Circadian Phase Has Profound Effects on Differential Expression Analysis

(2012) Polly Yingshan Hsu et al.   PLoS One

Unifying model of shoot gravitropism reveals proprioception as a central feature of posture control in plants

(2012) R. Bastien et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A High-Throughput Method for Illumina RNA-Seq Library Preparation

(2012) Ravi Kumar et al.   Frontiers in Plant Science

Timing of plant immune responses by a central circadian regulator

(2011) Wei Wang et al.   NATURE

Light-mediated polarization of the PIN3 auxin transporter for the phototropic response in Arabidopsis

(2011) Zhaojun Ding et al.   NATURE CELL BIOLOGY

Polarization of PIN3-dependent auxin transport for hypocotyl gravitropic response in Arabidopsis thaliana

(2011) Hana Rakusová et al.   PLANT JOURNAL

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

(2011) Sergei A. Filichkin et al.   PLoS One

Defence Responses of Arabidopsis thaliana to Infection by Pseudomonas syringae Are Regulated by the Circadian Clock

(2011) Vaibhav Bhardwaj et al.   PLoS One

The action mechanisms of plant cryptochromes

(2011) Hongtao Liu et al.   TRENDS IN PLANT SCIENCE

A novel phototropic response to red light is revealed in microgravity

(2010) Katherine D. L. Millar et al.   NEW PHYTOLOGIST

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Comprehensive Transcriptome Analysis of Auxin Responses in Arabidopsis

(2008) Ivan A. Paponov et al.   Molecular Plant

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

(2008) Michael F Covington et al.   GENOME BIOLOGY