GWAS Combined with WGCNA of Transcriptome and Metabolome to Excavate Key Candidate Genes for Rice Anaerobic Germination

Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice

(2021) Ling Su et al.   Rice

Identification of QTLs associated with the anaerobic germination potential using a set of Oryza nivara introgression lines

(2021) Licheng Liu et al.   Genes & Genomics

Analysis of genetic architecture and favorable allele usage of agronomic traits in a large collection of Chinese rice accessions

(2020) Xiuxiu Li et al.   Science China-Life Sciences

Genome-wide association studies using 50 K rice genic SNP chip unveil genetic architecture for anaerobic germination of deep-water rice population of Assam, India

(2020) Megha Rohilla et al.   MOLECULAR GENETICS AND GENOMICS

Identification of stable QTLs and candidate genes involved in anaerobic germination tolerance in rice via high-density genetic mapping and RNA-Seq

(2019) Jing Yang et al.   BMC GENOMICS

Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis

(2019) Sharmistha Ghosal et al.   Rice

QTL mapping and effect confirmation for anaerobic germination tolerance derived from the japonica weedy rice landrace PBR

(2019) Jong‐Min Jeong et al.   PLANT BREEDING

How does rice cope with too little oxygen during its early life?

(2019) Su‐May Yu et al.   NEW PHYTOLOGIST

A comparative UHPLC-QqQ-MS-based metabolomics approach for evaluating Chinese and North American wild rice

(2018) Ning Yan et al.   FOOD CHEMISTRY

Disruptions in valine degradation affect seed development and germination in Arabidopsis

(2017) Andrew B. Gipson et al.   PLANT JOURNAL

Seedling Establishment: A Dimmer Switch-Regulated Process between Dark and Light Signaling

(2017) Charlotte M. M. Gommers et al.   PLANT PHYSIOLOGY

RNA-Seq Analysis of Diverse Rice Genotypes to Identify the Genes Controlling Coleoptile Growth during Submerged Germination

(2017) Sheng-Kai Hsu et al.   Frontiers in Plant Science

Association Mapping Reveals Novel Genetic Loci Contributing to Flooding Tolerance during Germination in Indica Rice

(2017) Mengchen Zhang et al.   Frontiers in Plant Science

Opposing Functions for Plant Xanthine Dehydrogenase in Response to Powdery Mildew Infection: Production and Scavenging of Reactive Oxygen Species

(2016) Nancy R. Hofmann   PLANT CELL

The role of leucine and its metabolites in protein and energy metabolism

(2015) Yehui Duan et al.   AMINO ACIDS

Genetic variation and association mapping for 12 agronomic traits in indica rice

(2015) Qing Lu et al.   BMC GENOMICS

Genetic Mapping of Anaerobic Germination-Associated QTLs Controlling Coleoptile Elongation in Rice

(2015) Sheng-Kai Hsu et al.   Rice

QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red

(2013) Endang M. Septiningsih et al.   THEORETICAL AND APPLIED GENETICS

Anoxia Tolerance and Sugar Level in Roots and Coleoptiles of Aerobically Germinated Rice

(2011) Hisashi Kato-Noguchi et al.   PLANT PRODUCTION SCIENCE

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Analysis of the Rice Mitochondrial Carrier Family Reveals Anaerobic Accumulation of a Basic Amino Acid Carrier Involved in Arginine Metabolism during Seed Germination

(2010) N. L. Taylor et al.   PLANT PHYSIOLOGY

QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.)

(2009) S. Abdolhamid Angaji et al.   EUPHYTICA

Genetics of high-rise rice

(2009) Laurentius A. C. J. Voesenek et al.   NATURE

Defining Core Metabolic and Transcriptomic Responses to Oxygen Availability in Rice Embryos and Young Seedlings

(2009) R. Narsai et al.   PLANT PHYSIOLOGY

Coordinated Responses to Oxygen and Sugar Deficiency Allow Rice Seedlings to Tolerate Flooding

(2009) K.-W. Lee et al.   Science Signaling

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS