Optimization of Multi-Generation Multi-location Genomic Prediction Models for Recurrent Genomic Selection in an Upland Rice Population

Genomic prediction of zinc-biofortification potential in rice gene bank accessions

(2022) Mbolatantely Rakotondramanana et al.   THEORETICAL AND APPLIED GENETICS

Optimizing Plant Breeding Programs for Genomic Selection

(2022) Lance F. Merrick et al.   Agronomy-Basel

New cycle, same old mistakes? Overlapping vs. discrete generations in long-term recurrent selection

(2022) Marlee R. Labroo et al.   BMC GENOMICS

Genomic selection strategies to increase genetic gain in tea breeding programs

(2022) Nelson Lubanga et al.   Plant Genome

Independent Validation of Genomic Prediction in Strawberry Over Multiple Cycles

(2021) Luis F. Osorio et al.   Frontiers in Genetics

TrainSel: An R Package for Selection of Training Populations

(2021) Deniz Akdemir et al.   Frontiers in Genetics

Genomic selection can accelerate the biofortification of spring wheat

(2021) Reem Joukhadar et al.   THEORETICAL AND APPLIED GENETICS

From gene banks to farmer’s fields: using genomic selection to identify donors for a breeding program in rice to close the yield gap on smallholder farms

(2021) Ryokei Tanaka et al.   THEORETICAL AND APPLIED GENETICS

Designing Future Crops: Genomics-Assisted Breeding Comes of Age

(2021) Rajeev K. Varshney et al.   TRENDS IN PLANT SCIENCE

Impact of early genomiC prediction for recurrent selection in AN upland rice synthetic population

(2021) Cédric Baertschi et al.   G3-Genes Genomes Genetics

Training Set Optimization for Sparse Phenotyping in Genomic Selection: A Conceptual Overview

(2021) Julio Isidro y Sánchez et al.   Frontiers in Plant Science

Why and How to Switch to Genomic Selection: Lessons From Plant and Animal Breeding Experience

(2021) et al.   Frontiers in Genetics

Genomic prediction enables early but low-intensity selection in soybean segregating progenies

(2020) Leandro de Freitas Mendonça et al.   CROP SCIENCE

Genomic Prediction Enhanced Sparse Testing for Multi-environment Trials

(2020) Diego Jarquin et al.   G3-Genes Genomes Genetics

Enhancing the rate of genetic gain in public-sector plant breeding programs: lessons from the breeder’s equation

(2019) Joshua N. Cobb et al.   THEORETICAL AND APPLIED GENETICS

Training set optimization of genomic prediction by means of EthAcc

(2019) Brigitte Mangin et al.   PLoS One

Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice

(2019) Aditi Bhandari et al.   PLoS One

Novel strategies for genomic prediction of untested single-cross maize hybrids using unbalanced historical data

(2019) K. O. G. Dias et al.   THEORETICAL AND APPLIED GENETICS

Training Population Optimization for Genomic Selection

(2019) Inés Berro et al.   Plant Genome

Development of Genomic Prediction in Sorghum

(2018) Colleen H. Hunt et al.   CROP SCIENCE

Single-Step Reaction Norm Models for Genomic Prediction in Multienvironment Recurrent Selection Trials

(2018) Odilon P. Morais Júnior et al.   CROP SCIENCE

Improving accuracies of genomic predictions for drought tolerance in maize by joint modeling of additive and dominance effects in multi-environment trials

(2018) Kaio Olímpio Das Graças Dias et al.   HEREDITY

Assessing Prediction Models for Different Traits in a Rice Population Derived from a Recurrent Selection Program

(2018) Odilon P. Morais Júnior et al.   CROP SCIENCE

Impact of residual covariance structures on genomic prediction ability in multi-environment trials

(2018) Boby Mathew et al.   PLoS One

BGGE: A New Package for Genomic-Enabled Prediction Incorporating Genotype × Environment Interaction Models

(2018) Italo Granato et al.   G3-Genes Genomes Genetics

Rice diversity panel provides accurate genomic predictions for complex traits in the progenies of biparental crosses involving members of the panel

(2017) M. Ben Hassen et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

Genomics-assisted breeding – A revolutionary strategy for crop improvement

(2017) Peng-fei LENG et al.   Journal of Integrative Agriculture

Increasing Genomic-Enabled Prediction Accuracy by Modeling Genotype × Environment Interactions in Kansas Wheat

(2017) Diego Jarquín et al.   Plant Genome

Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program

(2017) Elliot L. Heffner et al.   Plant Genome

Extending the Marker × Environment Interaction Model for Genomic-Enabled Prediction and Genome-Wide Association Analysis in Durum Wheat

(2016) José Crossa et al.   CROP SCIENCE

Development of NIRS models to predict protein and amylose content of brown rice and proximate compositions of rice bran

(2016) Torit Baran Bagchi et al.   FOOD CHEMISTRY

Predicting rice hybrid performance using univariate and multivariate GBLUP models based on North Carolina mating design II

(2016) X Wang et al.   HEREDITY

Canopy Temperature and Vegetation Indices from High-Throughput Phenotyping Improve Accuracy of Pedigree and Genomic Selection for Grain Yield in Wheat

(2016) Jessica Rutkoski et al.   G3-Genes Genomes Genetics

Genomic Prediction of Genotype × Environment Interaction Kernel Regression Models

(2016) Jaime Cuevas et al.   Plant Genome

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding

(2015) Cécile Grenier et al.   PLoS One

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model

(2015) Marco Lopez-Cruz et al.   G3-Genes Genomes Genetics

Assessing Genomic Selection Prediction Accuracy in a Dynamic Barley Breeding Population

(2015) A. H. Sallam et al.   Plant Genome

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

(2015) Jennifer Spindel et al.   PLoS Genetics

Novel Methods to Optimize Genotypic Imputation for Low-Coverage, Next-Generation Sequence Data in Crop Plants

(2015) Kelly Swarts et al.   Plant Genome

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Exploring the areas of applicability of whole-genome prediction methods for Asian rice (Oryza sativa L.)

(2014) Akio Onogi et al.   THEORETICAL AND APPLIED GENETICS

Optimal Design of Preliminary Yield Trials with Genome-Wide Markers

(2013) Jeffrey B. Endelman et al.   CROP SCIENCE

Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes

(2013) Julien Frouin et al.   MOLECULAR BREEDING

Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing

(2013) José Crossa et al.   G3-Genes Genomes Genetics

synbreed: a framework for the analysis of genomic prediction data using R

(2012) Valentin Wimmer et al.   BIOINFORMATICS

Potential and Optimization of Genomic Selection for Fusarium Head Blight Resistance in Six-Row Barley

(2012) A. J. Lorenz et al.   CROP SCIENCE

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Maximizing the Reliability of Genomic Selection by Optimizing the Calibration Set of Reference Individuals: Comparison of Methods in Two Diverse Groups of Maize Inbreds (Zea mays L.)

(2012) R. Rincent et al.   GENETICS

Evaluation of Genomic Prediction Methods for Fusarium Head Blight Resistance in Wheat

(2012) Jessica Rutkoski et al.   Plant Genome

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Accuracy of genomic selection in European maize elite breeding populations

(2011) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE