Combining RADseq and contact zone analysis to decipher cryptic diversification in reptiles: Insights from the Spiny‐footed Lizard (Reptilia, Lacertidae)

The role of Sahara highlands in the diversification and desert colonization of the Bosc's fringe‐toed lizard

(2021) André Vicente Liz et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeographic diversification of the Mesalina olivieri species complex (Squamata: Lacertidae) with the description of a new species and a new subspecies endemic from North West Africa

(2021) Cristian Pizzigalli et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Mass of genes rather than master genes underlie the genomic architecture of amphibian speciation

(2021) Christophe Dufresnes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence of cryptic diversity in Podarcis peloponnesiacus and re‐evaluation of its current taxonomy; insights from genetic, morphological, and ecological data

(2021) Athina Kiourtsoglou et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Nuclear phylogenies and genomics of a contact zone establish the species rank of Podarcis lusitanicus (Squamata, Lacertidae)

(2021) Guilherme Caeiro-Dias et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Diversification and cryptic diversity of Ophisops elegans (Sauria, Lacertidae)

(2020) Claudine Montgelard et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Morphology and multilocus phylogeny of the Spiny-footed Lizard (Acanthodactylus erythrurus) complex reveal two new mountain species from the Moroccan Atlas

(2020) AURÉLIEN MIRALLES et al.   ZOOTAXA

Secondary contact zones of closely‐related Erebia butterflies overlap with narrow phenotypic and parasitic clines

(2020) Kay Lucek et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Revisiting a speciation classic: Comparative analyses support sharp but leaky transitions between Bombina toads

(2020) Christophe Dufresnes et al.   JOURNAL OF BIOGEOGRAPHY

Historical hybrid zone movement: More pervasive than appreciated

(2019) Ben Wielstra   JOURNAL OF BIOGEOGRAPHY

Phylogeography of a cryptic speciation continuum in Eurasian spadefoot toads (Pelobates )

(2019) Christophe Dufresnes et al.   MOLECULAR ECOLOGY

A phylogenomic resolution for the taxonomy of Aegean green lizards

(2019) Panagiotis Kornilios et al.   ZOOLOGICA SCRIPTA

ipyrad: Interactive assembly and analysis of RADseq datasets

(2019) Deren A R Eaton et al.   BIOINFORMATICS

Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system

(2018) Nikolaos Psonis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Multilocus phylogeny and coalescent species delimitation in Kotschy's gecko, Mediodactylus kotschyi : Hidden diversity and cryptic species

(2018) Panayiota Kotsakiozi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative phylogeography of amphibians and reptiles in Algeria suggests common causes for the east-west phylogeographic breaks in the Maghreb

(2018) Menad Beddek et al.   PLoS One

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes

(2017) Drew R. Schield et al.   Ecology and Evolution

Genetic variation among spiny-footed lizards in the Acanthodactylus pardalis group from North Africa

(2017) Miguel M. Fonseca et al.   AFRICAN ZOOLOGY

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Historical biogeography of the lacertid lizardMesalinain North Africa and the Middle East

(2014) P. Kapli et al.   JOURNAL OF BIOGEOGRAPHY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Trade-offs and utility of alternative RADseq methods: Reply to Puritzet al.

(2014) Kimberly R. Andrews et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

New Metrics for Comparison of Taxonomies Reveal Striking Discrepancies among Species Delimitation Methods in Madascincus Lizards

(2013) Aurélien Miralles et al.   PLoS One

The seven impediments in invertebrate conservation and how to overcome them

(2011) Pedro Cardoso et al.   BIOLOGICAL CONSERVATION

Genetic Drift Widens the Expected Cline but Narrows the Expected Cline Width

(2011) Jitka Polechová et al.   GENETICS

Large Scale Loss of Data in Low-Diversity Illumina Sequencing Libraries Can Be Recovered by Deferred Cluster Calling

(2011) Felix Krueger et al.   PLoS One

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Mitochondrial DNA reveals the genealogical history of the snake-eyed lizards (Ophisops elegans and O. occidentalis) (Sauria: Lacertidae)

(2008) P KYRIAZI et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Systematic and phylogeographical assessment of the Acanthodactylus erythrurus group (Reptilia: Lacertidae) based on phylogenetic analyses of mitochondrial and nuclear DNA

(2008) Miguel M. Fonseca et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One