The domestication and breeding history of Castanea crenata Siebold et Zucc. estimated by direction of gene flow and approximate Bayesian computation

Genetic characterization of Italian and Spanish wild and domesticated chestnut trees

(2022) Sara Alessandri et al.   SCIENTIA HORTICULTURAE

Gene flow between wild trees and cultivated varieties shapes the genetic structure of sweet chestnut (Castanea sativa Mill.) populations

(2022) Katarina Tumpa et al.   Scientific Reports

Genetic structure analysis of cultivated and wild chestnut populations reveals gene flow from cultivars to natural stands

(2021) Sogo Nishio et al.   Scientific Reports

Signatures of local adaptation to climate in natural populations of sweet chestnut (Castanea sativa Mill.) from southern Europe

(2021) Simone Castellana et al.   ANNALS OF FOREST SCIENCE

Extending Approximate Bayesian Computation with Supervised Machine Learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest

(2021) François‐David Collin et al.   Molecular Ecology Resources

Chromosome-level genome assembly of Japanese chestnut (Castanea crenata Sieb. et Zucc.) reveals conserved chromosomal segments in woody rosids

(2021) Kenta Shirasawa et al.   DNA RESEARCH

A strategic sampling design revealed the local genetic structure of cold-water fluvial sculpin: a focus on groundwater-dependent water temperature heterogeneity

(2021) Souta Nakajima et al.   HEREDITY

The demographic history of Castanea sativa Mill. in southwest Europe: A natural population structure modified by translocations

(2021) Josefa Fernández‐López et al.   MOLECULAR ECOLOGY

Spatial Autocorrelation Analysis Using MIG-seq Data Indirectly Estimated the Gamete and Larval Dispersal Range of the Blue Coral, Heliopora coerulea, Within Reefs

(2021) Daniel Frikli Mokodongan et al.   Frontiers in Marine Science

GenoDive v. 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids

(2020) Patrick G. Meirmans   Molecular Ecology Resources

Genetic diversity and the origin of commercial plantation of Indonesian teak on Java Island

(2020) Eko Prasetyo et al.   Tree Genetics & Genomes

Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France

(2020) Cathy Bouffartigue et al.   ANNALS OF FOREST SCIENCE

Evaluating the effect of overharvesting on genetic diversity and genetic population structure of the coconut crab

(2020) Takefumi Yorisue et al.   Scientific Reports

Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses

(2019) Zhenchang Liang et al.   Nature Communications

BA3‐SNPs: Contemporary migration reconfigured in BayesAss for next‐generation sequence data

(2019) Steven M. Mussmann et al.   Methods in Ecology and Evolution

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Genetic diversity analysis of cultivated and wild grapevine (Vitis vinifera L.) accessions around the Mediterranean basin and Central Asia

(2018) Summaira Riaz et al.   BMC PLANT BIOLOGY

Phylogeographic analysis suggests two origins for the riparian azalea Rhododendron indicum (L.) Sweet

(2018) Watanabe Yoichi et al.   HEREDITY

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Approximate Bayesian computation analysis of EST-associated microsatellites indicates that the broadleaved evergreen tree Castanopsis sieboldii survived the Last Glacial Maximum in multiple refugia in Japan

(2018) K. Aoki et al.   HEREDITY

Instant domestication process of European chestnut cultivars

(2018) Santiago Pereira-Lorenzo et al.   ANNALS OF APPLIED BIOLOGY

Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction

(2017) Xia Wang et al.   NATURE GENETICS

Landscape genetics structure of European sweet chestnut (Castanea sativa Mill): indications for conservation priorities

(2017) Claudia Mattioni et al.   Tree Genetics & Genomes

Genetic diversity of the sweet chestnut (Castanea sativa Mill.) in Central Europe and the western part of the Balkan Peninsula and evidence of marron genotype introgression into wild populations

(2017) Igor Poljak et al.   Tree Genetics & Genomes

Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement

(2017) Naibin Duan et al.   Nature Communications

The population demography ofBetula maximowicziana, a cool-temperate tree species in Japan, in relation to the last glacial period: its admixture-like genetic structure is the result of simple population splitting not admixing

(2015) Y. Tsuda et al.   MOLECULAR ECOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

MIG-seq: an effective PCR-based method for genome-wide single-nucleotide polymorphism genotyping using the next-generation sequencing platform

(2015) Yoshihisa Suyama et al.   Scientific Reports

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Current perspectives and the future of domestication studies

(2014) G. Larson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Use of population structure and parentage analyses to elucidate the spread of native cultivars of Japanese chestnut

(2014) Sogo Nishio et al.   Tree Genetics & Genomes

Microsatellite markers reveal a strong geographical structure in European populations of Castanea sativa (Fagaceae): Evidence for multiple glacial refugia

(2013) C. Mattioni et al.   AMERICAN JOURNAL OF BOTANY

Genetic and morphological characterization of chestnut (Castanea sativa Mill.) germplasm in Piedmont (north-western Italy)

(2013) Daniela Torello Marinoni et al.   Tree Genetics & Genomes

Vegetation and fire history with their implication for climatic change and fire events since the last deglacial in the Aso Valley, central Kyushu, southwestern Japan: new pollen and charcoal data

(2012) Jun-Wu Shu et al.   VEGETATION HISTORY AND ARCHAEOBOTANY

From forest to field: Perennial fruit crop domestication

(2011) Allison J. Miller et al.   AMERICAN JOURNAL OF BOTANY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Chestnut cultivar diversification process in the Iberian Peninsula, Canary Islands, and Azores

(2011) Santiago Pereira-Lorenzo et al.   GENOME

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Introgression between native and prehistorically naturalized (archaeophytic) wild pear (Pyrus spp.) populations in Northern Tohoku, Northeast Japan

(2009) Hiroyuki Iketani et al.   CONSERVATION GENETICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Population Genetic Structure of Fagus japonica Revealed by Nuclear Microsatellite Markers

(2009) Koichi Hiraoka et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES