Improving yield-related traits by editing the promoter of the heading date gene Ehd1 in rice

Environmental control of rice flowering time

(2023) Giulio Vicentini et al.   Plant Communications

Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size

(2022) Xiaoguang Song et al.   NATURE BIOTECHNOLOGY

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

(2021) Søren M. Karst et al.   NATURE METHODS

Fine-tuning Flowering Time via Genome Editing of Upstream Open Reading Frames of Heading Date 2 in Rice

(2021) Xinxin Liu et al.   Rice

STI PCR: An efficient method for amplification and de novo synthesis of long DNA sequences

(2021) Zhe Zhao et al.   Molecular Plant

Rice functional genomics: decades’ efforts and roads ahead

(2021) Rongzhi Chen et al.   Science China-Life Sciences

OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem

(2020) Martina Cerise et al.   NEW PHYTOLOGIST

OsRE1 Interacts with OsRIP1 to Regulate Rice Heading Date by Finely Modulating Ehd1 Expression

(2020) Juntao Chai et al.   PLANT BIOTECHNOLOGY JOURNAL

Strong photoperiod sensitivity is controlled by cooperation and competition among Hd1, Ghd7 and DTH8 in rice heading

(2020) Wubei Zong et al.   NEW PHYTOLOGIST

Early heading 7 interacts with DTH8, and regulates flowering time in rice

(2019) Maohong Cai et al.   PLANT CELL REPORTS

Enhanced rice salinity tolerance via CRISPR/Cas9-targeted mutagenesis of the OsRR22 gene

(2019) Anning Zhang et al.   MOLECULAR BREEDING

A New Rice Breeding Method: CRISPR /Cas9 System Editing of the Xa13 Promoter to Cultivate Transgene‐free Bacterial Blight‐resistant Rice

(2019) Changyan Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

(2019) Aaron M. Wenger et al.   NATURE BIOTECHNOLOGY

SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1

(2018) Pengfei Jiang et al.   NEW PHYTOLOGIST

Lessons from natural variations: artificially induced heading date variations for improvement of regional adaptation in rice

(2018) Yong Hu et al.   THEORETICAL AND APPLIED GENETICS

CRISPR-GE: A Convenient Software Toolkit for CRISPR-Based Genome Editing

(2017) Xianrong Xie et al.   Molecular Plant

Targeted Genome Editing in Genes and cis -Regulatory Regions Improves Qualitative and Quantitative Traits in Crops

(2017) Xitao Li et al.   Molecular Plant

Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice

(2017) Vittoria Brambilla et al.   PLANT CELL

funRiceGenes dataset for comprehensive understanding and application of rice functional genes

(2017) Wen Yao et al.   GigaScience

Upstream Open Reading Frames Differentially Regulate Gene-specific Translation in the Integrated Stress Response

(2016) Sara K. Young et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CRISPR/Cas9 Platforms for Genome Editing in Plants: Developments and Applications

(2016) Xingliang Ma et al.   Molecular Plant

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9

(2016) John G Doench et al.   NATURE BIOTECHNOLOGY

Hd1,aCONSTANSortholog in rice, functions as anEhd1repressor through interaction with monocot-specific CCT-domain protein Ghd7

(2016) Yasue Nemoto et al.   PLANT JOURNAL

Homodimerization of Ehd1 Is Required to Induce Flowering in Rice

(2016) Lae-Hyeon Cho et al.   PLANT PHYSIOLOGY

Photoperiodic Flowering: Time Measurement Mechanisms in Leaves

(2015) Young Hun Song et al.   Annual Review of Plant Biology

Editing plant genomes with CRISPR/Cas9

(2015) Khaoula Belhaj et al.   CURRENT OPINION IN BIOTECHNOLOGY

A Robust CRISPR/Cas9 System for Convenient, High-Efficiency Multiplex Genome Editing in Monocot and Dicot Plants

(2015) Xingliang Ma et al.   Molecular Plant

Genetic interactions between diverged alleles ofEarly heading date 1(Ehd1) andHeading date 3a(Hd3a)/ RICE FLOWERING LOCUS T1(RFT1) control differential heading and contribute to regional adaptation in rice (Oryza sativa)

(2015) Jing Zhao et al.   NEW PHYTOLOGIST

The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice

(2015) Yoshihiro Yoshitake et al.   Scientific Reports

Precision Genome Engineering and Agriculture: Opportunities and Regulatory Challenges

(2014) Daniel F. Voytas et al.   PLOS BIOLOGY

uORFdb—a comprehensive literature database on eukaryotic uORF biology

(2013) Klaus Wethmar et al.   NUCLEIC ACIDS RESEARCH

The accessible chromatin landscape of the human genome

(2012) Robert E. Thurman et al.   NATURE

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

Characterization of Xanthomonas oryzae-Responsive cis-Acting Element in the Promoter of Rice Race-Specific Susceptibility Gene Xa13

(2011) Ting Yuan et al.   Molecular Plant

Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence

(2011) Patricia J. Wittkopp et al.   NATURE REVIEWS GENETICS

DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously

(2010) X. Wei et al.   PLANT PHYSIOLOGY

Analysis of PHOTOPERIOD SENSITIVITY5 Sheds Light on the Role of Phytochromes in Photoperiodic Flowering in Rice

(2009) F. Andres et al.   PLANT PHYSIOLOGY

Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice

(2009) Y. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Resolution Mapping and Characterization of Open Chromatin across the Genome

(2008) Alan P. Boyle et al.   CELL

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS

RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice

(2008) C. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA