Describing difficult-to-culture bacteria: Taking a shortcut or investing time to discover something new?
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Describing difficult-to-culture bacteria: Taking a shortcut or investing time to discover something new?
Authors
Keywords
-
Journal
SYSTEMATIC AND APPLIED MICROBIOLOGY
Volume 46, Issue 5, Pages 126439
Publisher
Elsevier BV
Online
2023-06-30
DOI
10.1016/j.syapm.2023.126439
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The Evolution of Ecological Diversity in Acidobacteria
- (2022) Johannes Sikorski et al. Frontiers in Microbiology
- Phylum Gemmatimonadota and Its Role in the Environment
- (2022) Izabela Mujakić et al. Microorganisms
- Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation
- (2022) Sijia Liu et al. Microbiome
- Building a Cell House from Cellulose: The Case of the Soil Acidobacterium Acidisarcina polymorpha SBC82T
- (2022) Svetlana E. Belova et al. Microorganisms
- Gemmatimonas groenlandica sp. nov. Is an Aerobic Anoxygenic Phototroph in the Phylum Gemmatimonadetes
- (2021) Yonghui Zeng et al. Frontiers in Microbiology
- Out with the old and in with the new: time to rethink twentieth century chemotaxonomic practices in bacterial taxonomy
- (2021) Peter Vandamme et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Heme auxotrophy in abundant aquatic microbial lineages
- (2021) Suhyun Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils
- (2020) Anastasia A. Ivanova et al. PLoS One
- Expanding the diversity of bacterioplankton isolates and modeling isolation efficacy with large scale dilution-to-extinction cultivation
- (2020) Michael W. Henson et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Innovations to culturing the uncultured microbial majority
- (2020) William H. Lewis et al. NATURE REVIEWS MICROBIOLOGY
- Frigoriglobus tundricola gen. nov., sp. nov., a psychrotolerant cellulolytic planctomycete of the family Gemmataceae from a littoral tundra wetland
- (2020) Irina S. Kulichevskaya et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Wide distribution of Phycisphaera ‐like planctomycetes from WD2101 soil group in peatlands and genome analysis of the first cultivated representative
- (2020) Svetlana N. Dedysh et al. ENVIRONMENTAL MICROBIOLOGY
- Microbial dark matter coming to light: challenges and opportunities
- (2020) Jian-Yu Jiao et al. National Science Review
- Widespread soil bacterium that oxidizes atmospheric methane
- (2019) Alexander T. Tveit et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Culturing the Uncultured: Risk versus Reward
- (2019) J. Cameron Thrash mSystems
- Detection of Chitinolytic Capabilities in the Freshwater Planctomycete Planctomicrobium piriforme
- (2019) I. S. Kulichevskaya et al. MICROBIOLOGY
- Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology
- (2019) Sandra Wiegand et al. Nature Microbiology
- Limnoglobus roseus gen. nov., sp. nov., a novel freshwater planctomycete with a giant genome from the family Gemmataceae
- (2019) Irina S. Kulichevskaya et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Lacipirellula parvula gen. nov., sp. nov., representing a lineage of planctomycetes widespread in low-oxygen habitats, description of the family Lacipirellulaceae fam. nov. and proposal of the orders Pirellulales ord. nov., Gemmatales ord. nov. and Isosphaerales ord. nov.
- (2019) Svetlana N. Dedysh et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments
- (2018) Stephanie A. Eichorst et al. ENVIRONMENTAL MICROBIOLOGY
- Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
- (2018) Jongsik Chun et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Bacterial microcompartments
- (2018) Cheryl A. Kerfeld et al. NATURE REVIEWS MICROBIOLOGY
- The Molecular Basis of Noncanonical Bacterial Morphology
- (2018) Paul D. Caccamo et al. TRENDS IN MICROBIOLOGY
- Genome Analysis of Fimbriiglobus ruber SP5 T , a Planctomycete with Confirmed Chitinolytic Capability
- (2018) Nikolai V. Ravin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- An overview of the occurrence of ether- and ester-linked iso-diabolic acid membrane lipids in microbial cultures of the Acidobacteria: Implications for brGDGT paleoproxies for temperature and pH
- (2018) Jaap S. Sinninghe Damsté et al. ORGANIC GEOCHEMISTRY
- Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands
- (2018) Svetlana E. Belova et al. Frontiers in Microbiology
- Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov.
- (2017) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- An alternative polysaccharide uptake mechanism of marine bacteria
- (2017) Greta Reintjes et al. ISME Journal
- Mixotrophy drives niche expansion of verrucomicrobial methanotrophs
- (2017) Carlo R Carere et al. ISME Journal
- Determining the bacterial cell biology of Planctomycetes
- (2017) Christian Boedeker et al. Nature Communications
- Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications
- (2017) Anna M. Kielak et al. Scientific Reports
- Distinct Anaerobic Bacterial Consumers of Cellobiose-Derived Carbon in Boreal Fens with Different CO 2 /CH 4 Production Ratios
- (2016) Heli Juottonen et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov.
- (2016) Irina S. Kulichevskaya et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Longimicrobium terrae gen. nov., sp. nov., an oligotrophic bacterium of the under-represented phylum Gemmatimonadetes isolated through a system of miniaturized diffusion chambers
- (2016) Javier Pascual et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Staying in Shape: the Impact of Cell Shape on Bacterial Survival in Diverse Environments
- (2016) Desirée C. Yang et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Identification of microbial populations driving biopolymer degradation in acidic peatlands by metatranscriptomic analysis
- (2016) Anastasia A. Ivanova et al. MOLECULAR ECOLOGY
- Silvibacterium bohemicum gen. nov. sp. nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park
- (2016) Salvador Lladó et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment
- (2016) Louie Wurch et al. Nature Communications
- The Ecology of Acidobacteria: Moving beyond Genes and Genomes
- (2016) Anna M. Kielak et al. Frontiers in Microbiology
- Abundant Trimethylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands
- (2015) Eli K. Moore et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation
- (2015) Paula García-Fraile et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Chloracidobacterium thermophilum gen. nov., sp. nov.: an anoxygenic microaerophilic chlorophotoheterotrophic acidobacterium
- (2015) M. Tank et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Characterization of the microaerophilic, bacteriochlorophyll a-containing bacterium Gemmatimonas phototrophica sp. nov., and emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca
- (2015) Yonghui Zeng et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Persistence of the dominant soil phylumAcidobacteriaby trace gas scavenging
- (2015) Chris Greening et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nutrient requirements and growth physiology of the photoheterotrophic Acidobacterium, Chloracidobacterium thermophilum
- (2015) Marcus Tank et al. Frontiers in Microbiology
- Challenging the anthropocentric emphasis on phenotypic testing in prokaryotic species descriptions: rip it up and start again
- (2015) Iain C. Sutcliffe Frontiers in Genetics
- Characterization of a Planctomycetal Organelle: a Novel Bacterial Microcompartment for the Aerobic Degradation of Plant Saccharides
- (2014) Onur Erbilgin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Ether- and Ester-Boundiso-Diabolic Acid and Other Lipids in Members of Acidobacteria Subdivision 4
- (2014) Jaap S. Sinninghe Damsté et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Expanding the Verrucomicrobial Methanotrophic World: Description of Three Novel Species of Methylacidimicrobium gen. nov.
- (2014) Muriel C. F. van Teeseling et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A comparison of plate assay methods for detecting extracellular cellulase and xylanase activity
- (2014) Fatma Meddeb-Mouelhi et al. ENZYME AND MICROBIAL TECHNOLOGY
- Diverse Bacterial Microcompartment Organelles
- (2014) C. Chowdhury et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes
- (2014) Y. Zeng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Novel Mono-, Di-, and Trimethylornithine Membrane Lipids in Northern Wetland Planctomycetes
- (2013) Eli K. Moore et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Rare earth metals are essential for methanotrophic life in volcanic mudpots
- (2013) Arjan Pol et al. ENVIRONMENTAL MICROBIOLOGY
- Shallow breathing: bacterial life at low O2
- (2013) Rachel L. Morris et al. NATURE REVIEWS MICROBIOLOGY
- Comparative genomic and physiological analysis provides insights into the role ofAcidobacteriain organic carbon utilization in Arctic tundra soils
- (2012) Suman R. Rawat et al. FEMS MICROBIOLOGY ECOLOGY
- The organic geochemistry of glycerol dialkyl glycerol tetraether lipids: A review
- (2012) Stefan Schouten et al. ORGANIC GEOCHEMISTRY
- Blastocatella fastidiosa gen. nov., sp. nov., isolated from semiarid savanna soil – The first described species of Acidobacteria subdivision 4
- (2012) Bärbel U. Foesel et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Cultivation of unculturable soil bacteria
- (2012) Van H.T. Pham et al. TRENDS IN BIOTECHNOLOGY
- Telmatocola sphagniphila gen. nov., sp. nov., a Novel Dendriform Planctomycete from Northern Wetlands
- (2012) Irina S. Kulichevskaya et al. Frontiers in Microbiology
- A call to arms for systematists: revitalising the purpose and practises underpinning the description of novel microbial taxa
- (2011) Iain C. Sutcliffe et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- 13,16-Dimethyl Octacosanedioic Acid (iso-Diabolic Acid), a Common Membrane-Spanning Lipid of Acidobacteria Subdivisions 1 and 3
- (2011) Jaap S. Sinninghe Damsté et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Bacterial populations and environmental factors controlling cellulose degradation in an acidic Sphagnum peat
- (2011) Timofey A. Pankratov et al. ENVIRONMENTAL MICROBIOLOGY
- Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria
- (2011) Amaya M. Garcia Costas et al. ENVIRONMENTAL MICROBIOLOGY
- Telmatobacter bradus gen. nov., sp. nov., a cellulolytic facultative anaerobe from subdivision 1 of the Acidobacteria, and emended description of Acidobacterium capsulatum Kishimoto et al. 1991
- (2011) T. A. Pankratov et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Granulicella arctica sp. nov., Granulicella mallensis sp. nov., Granulicella tundricola sp. nov. and Granulicella sapmiensis sp. nov., novel acidobacteria from tundra soil
- (2011) M. K. Mannisto et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Ultrastructural Analysis and Identification of Envelope Proteins of "Candidatus Chloracidobacterium thermophilum" Chlorosomes
- (2011) A. M. Garcia Costas et al. JOURNAL OF BACTERIOLOGY
- Identification of the Bacteriochlorophylls, Carotenoids, Quinones, Lipids, and Hopanoids of "Candidatus Chloracidobacterium thermophilum"
- (2011) A. M. Garcia Costas et al. JOURNAL OF BACTERIOLOGY
- Autotrophic Methanotrophy in Verrucomicrobia: Methylacidiphilum fumariolicumSolV Uses the Calvin-Benson-Bassham Cycle for Carbon Dioxide Fixation
- (2011) A. F. Khadem et al. JOURNAL OF BACTERIOLOGY
- Directed Culturing of Microorganisms Using Metatranscriptomics
- (2011) L. Bomar et al. mBio
- Cultivating Uncultured Bacteria from Northern Wetlands: Knowledge Gained and Remaining Gaps
- (2011) Svetlana N. Dedysh Frontiers in Microbiology
- Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria
- (2010) Kathryn E. R. Davis et al. ENVIRONMENTAL MICROBIOLOGY
- Granulicella paludicola gen. nov., sp. nov., Granulicella pectinivorans sp. nov., Granulicella aggregans sp. nov. and Granulicella rosea sp. nov., acidophilic, polymer-degrading acidobacteria from Sphagnum peat bogs
- (2010) T. A. Pankratov et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
- (2009) N. L. Ward et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Notes on the characterization of prokaryote strains for taxonomic purposes
- (2009) B. J. Tindall et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Environmental, genomic and taxonomic perspectives on methanotrophicVerrucomicrobia
- (2009) Huub J. M. Op den Camp et al. Environmental Microbiology Reports
- Methane oxidation at 55 C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum
- (2008) T. Islam et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started