Critical assessment of methods of protein structure prediction (CASP)—Round XV

To split or not to split: CASP15 targets and their processing into tertiary structure evaluation units

(2023) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

New prediction categories in CASP15

(2023) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Estimation of model accuracy in CASP15 using the ModFOLDdock server

(2023) Nicholas S. Edmunds et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Estimating protein complex model accuracy based on ultrafast shape recognition and deep learning in CASP15

(2023) Jun Liu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improved protein structure prediction with trRosettaX2, AlphaFold2, and optimized MSAs in CASP15

(2023) Zhenling Peng et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of protein–ligand complexes in CASP15

(2023) Xavier Robin et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

RNA target highlights in CASP15: Evaluation of predicted models by structure providers

(2023) Rachael C. Kretsch et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Tertiary structure assessment at CASP15

(2023) Adam J. Simpkin et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15

(2023) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of the assessment—All about complexes

(2023) Gabriel Studer et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein target highlights in CASP15: Analysis of models by structure providers

(2023) Leila T. Alexander et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of protein assemblies by structure sampling followed by interface‐focused scoring

(2023) Kliment Olechnovič et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

ColabFold: making protein folding accessible to all

(2022) Milot Mirdita et al.   NATURE METHODS

Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants

(2022) Rui Yin et al.   PROTEIN SCIENCE

A novel family of secreted insect proteins linked to plant gall development

(2021) Aishwarya Korgaonkar et al.   CURRENT BIOLOGY

Machine-learning methods for ligand–protein molecular docking

(2021) Kevin Crampon et al.   DRUG DISCOVERY TODAY

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Continuous Automated Model EvaluatiOn (CAMEO)—Perspectives on the future of fully automated evaluation of structure prediction methods

(2021) Xavier Robin et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of protein model structure accuracy estimation in CASP14 : Old and new challenges

(2021) Sohee Kwon et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Critical Assessment of Methods of Protein Structure Prediction ( CASP ) – Round XIV

(2021) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Geometric deep learning of RNA structure

(2021) Raphael J. L. Townshend et al.   SCIENCE

Accurate prediction of protein structures and interactions using a three-track neural network

(2021) Minkyung Baek et al.   SCIENCE

Applying and improving AlphaFold at CASP14

(2021) John Jumper et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies

(2020) Conor D. Parks et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Modeling protein interactions and complexes in CAPRI 7 th CAPRI evaluation meeting April 3‐5 EMBL‐EBI, Hinxton UK

(2020) Shoshana J. Wodak et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Critical assessment of methods of protein structure prediction (CASP)—Round XIII

(2019) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

(2013) Valerio Mariani et al.   BIOINFORMATICS