Chromatin accessibility mediated transcriptome changes contribute to flavor substance alterations and jasmonic acid hyperaccumulation during oolong tea withering process

5mC DNA methylation modification-mediated regulation in tissue functional differentiation and important favor substance synthesis of tea plant (Camellia sinensis L.)

(2023) Weilong Kong et al.   Horticulture Research

RNA Methylome Reveals the m6A-mediated Regulation of Flavor Metabolites in Tea Leaves under Solar-withering

(2023) Chen Zhu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Architecture and Dynamics of the Wounding-Induced Gene Regulatory Network During the Oolong Tea Manufacturing Process (Camellia sinensis)

(2022) Yucheng Zheng et al.   Frontiers in Plant Science

The jasmonate‐induced bHLH gene SlJIG functions in terpene biosynthesis and resistance to insects and fungus

(2022) Yunyun Cao et al.   Journal of Integrative Plant Biology

CsMYB1 integrates the regulation of trichome development and catechins biosynthesis in tea plant domestication

(2022) Penghui Li et al.   NEW PHYTOLOGIST

Diverse roles of MYB transcription factors in regulating secondary metabolite biosynthesis, shoot development, and stress responses in tea plants ( Camellia sinensis )

(2022) Penghui Li et al.   PLANT JOURNAL

Enhanced volatile emissions and anti-herbivore functions mediated by the synergism between jasmonic acid and salicylic acid pathways in tea plants

(2022) Long Jiao et al.   Horticulture Research

Integrating ATAC-seq and RNA-seq Reveals the Dynamics of Chromatin Accessibility and Gene Expression in Apple Response to Drought

(2022) Shicong Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Allele‐specific expression and chromatin accessibility contribute to heterosis in tea plants ( Camellia sinensis )

(2022) Pengjie Wang et al.   PLANT JOURNAL

The Impact of Different Withering Approaches on the Metabolism of Flavor Compounds in Oolong Tea Leaves

(2022) Yahui Wang et al.   Foods

Genome-Wide Identification and Expression Patterns of the C2H2-Zinc Finger Gene Family Related to Stress Responses and Catechins Accumulation in Camellia sinensis [L.] O. Kuntze

(2021) Shiyang Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Molecular Basis of the Distinct Metabolic Features in Shoot Tips and Roots of Tea Plants (Camellia sinensis): Characterization of MYB Regulator for Root Theanine Synthesis

(2021) Yanrui Zhang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Chromatin accessibility and translational landscapes of tea plants under chilling stress

(2021) Pengjie Wang et al.   Horticulture Research

Study of aroma compound formations and transformations during Jinxuan and Qingxin oolong tea processing

(2021) Huifan Liu et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY

Understanding the promotion of withering treatment on quality of postharvest tea leaves using UHPLC-orbitrap-MS metabolomics integrated with TMT-Based proteomics

(2021) Tiancheng Ni et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis

(2021) Xingtan Zhang et al.   NATURE GENETICS

Metabolic Flow of C6 Volatile Compounds From LOX-HPL Pathway Based on Airflow During the Post-harvest Process of Oolong Tea

(2021) Zi-wei Zhou et al.   Frontiers in Plant Science

Association between chemistry and taste of tea: A review

(2020) Liang Zhang et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

The R2R3-MYB transcription factor CsMYB73 negatively regulates l-Theanine biosynthesis in tea plants (Camellia sinensis L.)

(2020) Beibei Wen et al.   PLANT SCIENCE

Transcription factor CsDOF regulates glutamine metabolism in tea plants (Camellia sinensis)

(2020) Jinhe Wang et al.   PLANT SCIENCE

Chinese oolong tea: An aromatic beverage produced under multiple stresses

(2020) Lanting Zeng et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Understanding different regulatory mechanisms of proteinaceous and non-proteinaceous amino acid formation in tea (Camellia sinensis) provides new insights into the safe and effective alteration of tea flavor and function

(2019) Zhenming Yu et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Chromatin accessibility and the regulatory epigenome

(2019) Sandy L. Klemm et al.   NATURE REVIEWS GENETICS

A Sucrose-Induced MYB (SIMYB) Transcription Factor Promoting Proanthocyanidin Accumulation in the Tea Plant (Camellia sinensis)

(2019) Peiqiang Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

LcNAC13 Physically Interacts with LcR1MYB1 to Coregulate Anthocyanin Biosynthesis-Related Genes during Litchi Fruit Ripening

(2019) Guoxiang Jiang et al.   Biomolecules

Formation of and changes in phytohormone levels in response to stress during the manufacturing process of oolong tea (Camellia sinensis)

(2019) Lanting Zeng et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Non-targeted metabolomics analysis reveals dynamic changes of volatile and non-volatile metabolites during oolong tea manufacture

(2019) Si Chen et al.   FOOD RESEARCH INTERNATIONAL

Low temperature synergistically promotes wounding-induced indole accumulation by INDUCER OF CBF EXPRESSION-mediated alterations of jasmonic acid signaling in Camellia sinensis

(2019) Ying Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Apple NAC transcription factor MdNAC52 regulates biosynthesis of anthocyanin and proanthocyanidin through MdMYB9 and MdMYB11

(2019) Qingguo Sun et al.   PLANT SCIENCE

Transcriptome and Phytochemical Analyses Provide New Insights Into Long Non-Coding RNAs Modulating Characteristic Secondary Metabolites of Oolong Tea (Camellia sinensis) in Solar-Withering

(2019) Chen Zhu et al.   Frontiers in Plant Science

OUP accepted manuscript

(2018)   BIOINFORMATICS

Formation mechanism of the oolong tea characteristic aroma during bruising and withering treatment

(2018) Ci-Jie Hu et al.   FOOD CHEMISTRY

Plant Hormonomics: Multiple Phytohormone Profiling by Targeted Metabolomics

(2018) Jan Šimura et al.   PLANT PHYSIOLOGY

CsMYB5a and CsMYB5e from Camellia sinensis differentially regulate anthocyanin and proanthocyanidin biosynthesis

(2018) Xiaolan Jiang et al.   PLANT SCIENCE

Novel insight into the role of withering process in characteristic flavor formation of teas using transcriptome analysis and metabolite profiling

(2018) Yu Wang et al.   FOOD CHEMISTRY

A coupled role for CsMYB75 and CsGSTF1 in anthocyanin hyperaccumulation in purple tea

(2018) Kang Wei et al.   PLANT JOURNAL

Manipulation of GES and ERG20 for geraniol overproduction in Saccharomyces cerevisiae

(2017) Guo-Zhen Jiang et al.   METABOLIC ENGINEERING

Implementation of CsLIS/NES in linalool biosynthesis involves transcript splicing regulation in Camellia sinensis

(2017) Guo-Feng Liu et al.   PLANT CELL AND ENVIRONMENT

α-Farnesene and ocimene induce metabolite changes by volatile signaling in neighboring tea ( Camellia sinensis ) plants

(2017) Lanting Zeng et al.   PLANT SCIENCE

Transcriptional profiling of catechins biosynthesis genes during tea plant leaf development

(2017) Fei Guo et al.   PLANTA

Functional characterization of NES and GES responsible for the biosynthesis of (E)-nerolidol and (E,E)-geranyllinalool in Tripterygium wilfordii

(2017) Ping Su et al.   Scientific Reports

Melon13-lipoxygenase CmLOX18 may be involved in C6 volatiles biosynthesis in fruit

(2017) Chong Zhang et al.   Scientific Reports

Formation of Volatile Tea Constituent Indole During the Oolong Tea Manufacturing Process

(2016) Lanting Zeng et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

A 13-lipoxygenase, TomloxC, is essential for synthesis of C5 flavour volatiles in tomato

(2014) Jiyuan Shen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Chromatin accessibility: a window into the genome

(2014) Maria Tsompana et al.   Epigenetics & Chromatin

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Complexity and robustness of the flavonoid transcriptional regulatory network revealed by comprehensive analyses of MYB-bHLH-WDR complexes and their targets in Arabidopsis seed

(2013) Wenjia Xu et al.   NEW PHYTOLOGIST

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Herbivore-Induced Volatiles from Tea (Camellia sinensis) Plants and Their Involvement in Intraplant Communication and Changes in Endogenous Nonvolatile Metabolites

(2011) Fang Dong et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Production, Quality, and Biological Effects of Oolong Tea (Camellia sinensis)

(2010) Yu Long Chen et al.   FOOD REVIEWS INTERNATIONAL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Reaction of the Black Tea Pigment Theaflavin during Enzymatic Oxidation of Tea Catechins

(2009) Yan Li et al.   JOURNAL OF NATURAL PRODUCTS

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings

(2008) Antonio Gonzalez et al.   PLANT JOURNAL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY