Bacterial SNPs in the human gut microbiome associate with host BMI

Environmental factors shaping the gut microbiome in a Dutch population

(2022) R. Gacesa et al.   NATURE

An atlas of robust microbiome associations with phenotypic traits based on large-scale cohorts from two continents

(2022) Daphna Rothschild et al.   PLoS One

An expanded reference map of the human gut microbiome reveals hundreds of previously unknown species

(2022) Sigal Leviatan et al.   Nature Communications

inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains

(2021) Matthew R. Olm et al.   NATURE BIOTECHNOLOGY

10 K: a large‐scale prospective longitudinal study in Israel

(2021) Smadar Shilo et al.   EUROPEAN JOURNAL OF EPIDEMIOLOGY

Mendelian Randomization Analysis Reveals Causal Effects of the Human Gut Microbiota on Abdominal Obesity

(2021) Qian Xu et al.   JOURNAL OF NUTRITION

The role of Wnt pathway in obesity induced inflammation and diabetes: a review

(2021) Bhabajyoti Das et al.   Journal of Diabetes and Metabolic Disorders

Fast and accurate metagenotyping of the human gut microbiome with GT-Pro

(2021) Zhou Jason Shi et al.   NATURE BIOTECHNOLOGY

SciPy 1.0: fundamental algorithms for scientific computing in Python

(2020) Pauli Virtanen et al.   NATURE METHODS

The critical role of Faecalibacterium prausnitzii in human health: An overview

(2020) Hamed Ebrahimzadeh Leylabadlo et al.   MICROBIAL PATHOGENESIS

Structural variation in the gut microbiome associates with host health

(2019) David Zeevi et al.   NATURE

Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

(2019) Francesca De Filippis et al.   Cell Host & Microbe

Adaptive Evolution within Gut Microbiomes of Healthy People

(2019) Shijie Zhao et al.   Cell Host & Microbe

Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa metabolism

(2019) Vayu Maini Rekdal et al.   SCIENCE

Population Genetics in the Human Microbiome

(2019) Nandita R. Garud et al.   TRENDS IN GENETICS

The Influence of the Gut Microbiome on Cancer, Immunity, and Cancer Immunotherapy

(2018) Vancheswaran Gopalakrishnan et al.   CANCER CELL

Bilophila wadsworthia aggravates high fat diet induced metabolic dysfunctions in mice

(2018) Jane M. Natividad et al.   Nature Communications

Microbial strain-level population structure and genetic diversity from metagenomes

(2017) Duy Tin Truong et al.   GENOME RESEARCH

Mobile genes in the human microbiome are structured from global to individual scales

(2016) I. L. Brito et al.   NATURE

Microbial genome-wide association studies: lessons from human GWAS

(2016) Robert A. Power et al.   NATURE REVIEWS GENETICS

Metagenome-wide association studies: fine-mining the microbiome

(2016) Jun Wang et al.   NATURE REVIEWS MICROBIOLOGY

The Human Intestinal Microbiome in Health and Disease

(2016) Susan V. Lynch et al.   NEW ENGLAND JOURNAL OF MEDICINE

Identifying lineage effects when controlling for population structure improves power in bacterial association studies

(2016) Sarah G. Earle et al.   Nature Microbiology

Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species

(2015) Sharon Greenblum et al.   CELL

Personalized Nutrition by Prediction of Glycemic Responses

(2015) David Zeevi et al.   CELL

The advent of genome-wide association studies for bacteria

(2015) Peter E Chen et al.   CURRENT OPINION IN MICROBIOLOGY

A single natural nucleotide mutation alters bacterial pathogen host tropism

(2015) David Viana et al.   NATURE GENETICS

Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology

(2014) Timothy D Read et al.   Genome Medicine

Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome

(2013) Shin Yoshimoto et al.   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Fortifying the barrier: the impact of lipid A remodelling on bacterial pathogenesis

(2013) Brittany D. Needham et al.   NATURE REVIEWS MICROBIOLOGY

Intestinal Microbial Metabolism of Phosphatidylcholine and Cardiovascular Risk

(2013) W.H. Wilson Tang et al.   NEW ENGLAND JOURNAL OF MEDICINE

Genomic variation landscape of the human gut microbiome

(2012) Siegfried Schloissnig et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE