Pleoardoris graminearum , gen. et sp. nov., a new member of Pleosporales from North American Plains, its biogeography and effects on a foundation grass species

Darksidea phi, sp. nov., a dark septate root-associated fungus in foundation grasses in North American Great Plains

(2022) María-José Romero-Jiménez et al.   MYCOLOGIA

Biogeography of root‐associated fungi in foundation grasses of North American plains

(2021) Jennifer A. Rudgers et al.   JOURNAL OF BIOGEOGRAPHY

Seasonal variation and potential roles of dark septate fungi in an arid grassland

(2021) Cedric Ndinga-Muniania et al.   MYCOLOGIA

Advances in the Role of Dark Septate Endophytes in the Plant Resistance to Abiotic and Biotic Stresses

(2021) Mila Santos et al.   Journal of Fungi

Experimental drought re‐ordered assemblages of root‐associated fungi across North American grasslands

(2020) Devon Lagueux et al.   JOURNAL OF ECOLOGY

Dark Septate Endophyte Improves Drought Tolerance of Ormosia hosiei Hemsley & E. H. Wilson by Modulating Root Morphology, Ultrastructure, and the Ratio of Root Hormones

(2019) Yan Liu et al.   Forests

Drought consistently alters the composition of soil fungal and bacterial communities in grasslands from two continents

(2018) Raúl Ochoa-Hueso et al.   GLOBAL CHANGE BIOLOGY

Soil abiotic variables are more important than Salicaceae phylogeny or habitat specialization in determining soil microbial community structure

(2018) Sonya Erlandson et al.   MOLECULAR ECOLOGY

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi

(2018) Dániel G. Knapp et al.   Scientific Reports

Dark septate endophytes isolated from a xerophyte plant promote the growth of Ammopiptanthus mongolicus under drought condition

(2018) Xia Li et al.   Scientific Reports

Short-Term Transcriptional Response of Microbial Communities to Nitrogen Fertilization in a Pine Forest Soil

(2018) Michaeline B. N. Albright et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation

(2018) D. Vu et al.   STUDIES IN MYCOLOGY

Dark Septate Endophyte Improves Drought Tolerance in Sorghum

(2017) Qiaoming Zhang et al.   INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY

Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats

(2017) Terry J. Torres-Cruz et al.   MYCOLOGIA

Development of a Novel Quantum Dots and Graphene Oxide Based FRET Assay for Rapid Detection of invA Gene of Salmonella

(2017) Jiubiao Guo et al.   Frontiers in Microbiology

BBMerge – Accurate paired shotgun read merging via overlap

(2017) Brian Bushnell et al.   PLoS One

OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes

(2016) Alison C. Testa et al.   Genome Biology and Evolution

Unraveling the role of dark septate endophyte (DSE) colonizing maize (Zea mays) under cadmium stress: physiological, cytological and genic aspects

(2016) Jun-ling Wang et al.   Scientific Reports

Age matters: the effects of volatile organic compounds emitted by Trichoderma atroviride on plant growth

(2015) Samantha Lee et al.   ARCHIVES OF MICROBIOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Biotic and abiotic predictors of fungal colonization in grasses of the Colorado Rockies

(2015) Luciana B. Ranelli et al.   DIVERSITY AND DISTRIBUTIONS

The local environment determines the assembly of root endophytic fungi at a continental scale

(2015) Kyriaki Glynou et al.   ENVIRONMENTAL MICROBIOLOGY

Root traits contributing to drought tolerance of synthetic hexaploid wheat in a greenhouse study

(2015) Steven R. Becker et al.   EUPHYTICA

Dark septate endophytic pleosporalean genera from semiarid areas

(2015) D.G. Knapp et al.   PERSOONIA

piecewiseSEM: Piecewise structural equation modelling inr for ecology, evolution, and systematics

(2015) Jonathan S. Lefcheck   Methods in Ecology and Evolution

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Extreme temperatures, foundation species, and abrupt ecosystem change: an example from an iconic seagrass ecosystem

(2014) Jordan A. Thomson et al.   GLOBAL CHANGE BIOLOGY

Systemic Resistance Induced by Volatile Organic Compounds Emitted by Plant Growth-Promoting Fungi in Arabidopsis thaliana

(2014) Hushna Ara Naznin et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Fungal symbionts alter plant responses to global change

(2013) Stephanie N. Kivlin et al.   AMERICAN JOURNAL OF BOTANY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Impacts of simulated climate change and fungal symbionts on survival and growth of a foundation species in sand dunes

(2013) Sarah M. Emery et al.   OECOLOGIA

Isolates of dark septate endophytes reduce metal uptake and improve physiology of Salix caprea L.

(2013) M. Likar et al.   PLANT AND SOIL

Identification of Volatiles Produced by Cladosporium cladosporioides CL-1, a Fungal Biocontrol Agent That Promotes Plant Growth

(2013) Diby Paul et al.   SENSORS

Species concepts in Cercospora: spotting the weeds among the roses

(2013) J.Z. Groenewald et al.   STUDIES IN MYCOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Arabidopsis thaliana as a model system for testing the effect of Trichoderma volatile organic compounds

(2012) Richard Hung et al.   Fungal Ecology

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Analysis of Volatile Organic Compounds Emitted by Plant Growth-Promoting Fungus Phoma sp. GS8-3 for Growth Promotion Effects on Tobacco

(2012) Hushna Ara Naznin et al.   MICROBES AND ENVIRONMENTS

The Dark Side Is Not Fastidious – Dark Septate Endophytic Fungi of Native and Invasive Plants of Semiarid Sandy Areas

(2012) Dániel G. Knapp et al.   PLoS One

Distribution and drivers of ectomycorrhizal fungal communities across the North American Arctic

(2012) I. Timling et al.   Ecosphere

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

Talaromyces wortmannii FS2 emits β-caryphyllene, which promotes plant growth and induces resistance

(2011) Yasuo Yamagiwa et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

A meta-analysis of plant responses to dark septate root endophytes

(2011) K. K. Newsham   NEW PHYTOLOGIST

Zymoseptoria gen. nov.: a new genus to accommodate Septoria-like species occurring on graminicolous hosts

(2011) W. Quaedvlieg et al.   PERSOONIA

Shifting fungal endophyte communities colonize Bouteloua gracilis: effect of host tissue and geographical distribution

(2010) José Herrera et al.   MYCOLOGIA

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Novel Root Fungal Consortium Associated with a Dominant Desert Grass

(2008) A. Porras-Alfaro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH