Unidirectional trans‐Atlantic gene flow and a mixed spawning area shape the genetic connectivity of Atlantic bluefin tuna

The genomic basis and environmental correlates of local adaptation in the Atlantic horse mackerel (Trachurus trachurus)

(2023) Angela P. Fuentes‐Pardo et al.   Evolutionary Applications

Evidence of bluefin tuna (Thunnus thynnus) spawning in the Slope Sea region of the Northwest Atlantic from electronic tags

(2023) Emilius A Aalto et al.   ICES JOURNAL OF MARINE SCIENCE

What is N e, anyway?

(2022) Robin S Waples   JOURNAL OF HEREDITY

A chromosomal inversion may facilitate adaptation despite periodic gene flow in a freshwater fish

(2022) Matt J. Thorstensen et al.   Ecology and Evolution

First tagging data on large Atlantic bluefin tuna returning to Nordic waters suggest repeated behaviour and skipped spawning

(2022) Kim Aarestrup et al.   Scientific Reports

Genetic decline and recovery of a demographically rebuilt fishery species

(2022) Jennifer A. Hoey et al.   MOLECULAR ECOLOGY

Stepping up to genome scan allows stock differentiation in the worldwide distributed blue shark Prionace glauca

(2022) Natacha Nikolic et al.   MOLECULAR ECOLOGY

Evolution at two time frames: ancient structural variants involved in post-glacial divergence of the European plaice (Pleuronectes platessa)

(2021) Alan Le Moan et al.   HEREDITY

Stock-of-origin catch estimation of Atlantic bluefin tuna (Thunnus thynnus) based on observed spatial distributions

(2021) Emilius A. Aalto et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Locally adaptive inversions modulate genetic variation at different geographic scales in a seaweed fly

(2021) Claire Mérot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Individual assignment of Atlantic bluefin tuna in the northwestern Atlantic Ocean using single nucleotide polymorphisms reveals an increasing proportion of migrants from the eastern Atlantic Ocean.

(2021) Gregory Neils Puncher et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Genetic connectivity between Atlantic bluefin tuna larvae spawned in the Gulf of Mexico and in the Mediterranean Sea

(2021) Carolina Johnstone et al.   PeerJ

Support for the Slope Sea as a major spawning ground for Atlantic bluefin tuna: evidence from larval abundance, growth rates, and particle-tracking simulations

(2021) Christina M. Hernández et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Multiple chromosomal inversions contribute to adaptive divergence of a dune sunflower ecotype

(2020) Kaichi Huang et al.   MOLECULAR ECOLOGY

Incorporating putatively neutral and adaptive genomic data into marine conservation planning

(2020) Amanda Xuereb et al.   CONSERVATION BIOLOGY

Tracking Atlantic bluefin tuna from foraging grounds off the west coast of Ireland

(2020) Thomas W Horton et al.   ICES JOURNAL OF MARINE SCIENCE

The contribution of ancient admixture to reproductive isolation between European sea bass lineages

(2020) Maud Duranton et al.   Evolution Letters

Combining genetic markers with stable isotopes in otoliths reveals complexity in the stock structure of Atlantic bluefin tuna (Thunnus thynnus)

(2020) Deirdre Brophy et al.   Scientific Reports

Atlantic bluefin tuna (Thunnus thynnus) in Greenland — mixed-stock origin, diet, hydrographic conditions, and repeated catches in this new fringe area

(2020) Teunis Jansen et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Disentangling structural genomic and behavioral barriers in a sea of connectivity

(2019) Julia M.I. Barth et al.   MOLECULAR ECOLOGY

Atlantic Multidecadal Oscillations drive the basin-scale distribution of Atlantic bluefin tuna

(2019) Robin Faillettaz et al.   Science Advances

Large‐scale distribution of tuna species in a warming ocean

(2019) Maite Erauskin‐Extramiana et al.   GLOBAL CHANGE BIOLOGY

Unlocking the potential of ancient fish DNA in the genomic era

(2019) Tom Oosting et al.   Evolutionary Applications

Investigating the suitability of the Slope Sea for Atlantic bluefin tuna spawning using a high-resolution ocean circulation model

(2019) Irina I Rypina et al.   ICES JOURNAL OF MARINE SCIENCE

Determining natal origin for improved management of Atlantic bluefin tuna

(2019) Naiara Rodríguez‐Ezpeleta et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Chromosomal inversions in the Atlantic cod genome: Implications for management of Canada’s Northern cod stock

(2019) Gregory Neils Puncher et al.   FISHERIES RESEARCH

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Weak genetic structure despite strong genomic signal in lesser sandeel in the North Sea

(2019) Belén Jiménez‐Mena et al.   Evolutionary Applications

Genome‐wide SNPs resolve spatiotemporal patterns of connectivity within striped marlin ( Kajikia audax ), a broadly distributed and highly migratory pelagic species

(2019) Nadya R. Mamoozadeh et al.   Evolutionary Applications

Improvement of the Pacific bluefin tuna (Thunnus orientalis) reference genome and development of male-specific DNA markers

(2019) Ayako Suda et al.   Scientific Reports

Mixed stock origin of Atlantic bluefin tuna in the U.S. rod and reel fishery (Gulf of Maine) and implications for fisheries management

(2019) Lisa A. Kerr et al.   FISHERIES RESEARCH

Supergene Evolution Triggered by the Introgression of a Chromosomal Inversion

(2018) Paul Jay et al.   CURRENT BIOLOGY

Movements and geographic distribution of juvenile bluefin tuna in the Northeast Atlantic, described through internal and satellite archival tags

(2018) Igor Arregui et al.   ICES JOURNAL OF MARINE SCIENCE

Spatial dynamics and mixing of bluefin tuna in the Atlantic Ocean and Mediterranean Sea revealed using next-generation sequencing

(2018) Gregory N. Puncher et al.   Molecular Ecology Resources

Eco-Evolutionary Genomics of Chromosomal Inversions

(2018) Maren Wellenreuther et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylotranscriptomic Insights into the Diversification of Endothermic Thunnus Tunas

(2018) Adam G Ciezarek et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic Differentiation and Demographic Histories of Atlantic and Indo-Pacific Yellowfin Tuna (Thunnus albacares) Populations

(2017) Julia M.I. Barth et al.   Genome Biology and Evolution

Genome architecture enables local adaptation of Atlantic cod despite high connectivity

(2017) Julia M. I. Barth et al.   MOLECULAR ECOLOGY

Evaluating mechanisms of diversification in a Guineo-Congolian tropical forest frog using demographic model selection

(2017) Daniel M. Portik et al.   MOLECULAR ECOLOGY

Harnessing the Power of Genomics to Secure the Future of Seafood

(2017) Louis Bernatchez et al.   TRENDS IN ECOLOGY & EVOLUTION

How fisheries management can benefit from genomics?

(2016) Fausto Valenzuela-Quiñonez   Briefings in Functional Genomics

Lessons learned from practical approaches to reconcile mismatches between biological population structure and stock units of marine fish

(2016) Lisa A. Kerr et al.   ICES JOURNAL OF MARINE SCIENCE

Forty years of fishing: changes in age structure and stock mixing in northwestern Atlantic bluefin tuna ( Thunnus thynnus ) associated with size-selective and long-term exploitation

(2016) M. R. Siskey et al.   ICES JOURNAL OF MARINE SCIENCE

On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes

(2016) L. Bernatchez   JOURNAL OF FISH BIOLOGY

Genomics of local adaptation with gene flow

(2016) Anna Tigano et al.   MOLECULAR ECOLOGY

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

RAD-seq derived genome-wide nuclear markers resolve the phylogeny of tunas

(2016) Natalia Díaz-Arce et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Data do not support new claims about bluefin tuna spawning or abundance

(2016) Carl Safina   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Implications of alternative spawning for bluefin tuna remain unclear

(2016) John F. Walter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reply to Safina and Walter et al.: Multiple lines of evidence for size-structured spawning migrations in western Atlantic bluefin tuna

(2016) David E. Richardson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discovery of a spawning ground reveals diverse migration strategies in Atlantic bluefin tuna (Thunnus thynnus)

(2016) David E. Richardson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod

(2016) Paul R. Berg et al.   Scientific Reports

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

(2015) Pierre-Alexandre Gagnaire et al.   Evolutionary Applications

Archived DNA reveals fisheries and climate induced collapse of a major fishery

(2015) Sara Bonanomi et al.   Scientific Reports

Ocean's eleven: a critical evaluation of the role of population, evolutionary and molecular genetics in the management of wild fisheries

(2015) Jennifer R Ovenden et al.   FISH AND FISHERIES

Depressed resilience of bluefin tuna in the western atlantic and age truncation

(2014) D. H. Secor et al.   CONSERVATION BIOLOGY

Comparative evaluation of potential indicators and temporal sampling protocols for monitoring genetic erosion

(2014) Sean Hoban et al.   Evolutionary Applications

Crossing the line: migratory and homing behaviors of Atlantic bluefin tuna

(2014) JR Rooker et al.   MARINE ECOLOGY PROGRESS SERIES

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

Adaptive introgression between Anopheles sibling species eliminates a major genomic island but not reproductive isolation

(2014) Chris S. Clarkson et al.   Nature Communications

Oceanographic changes and exploitation drive the spatio-temporal dynamics of Atlantic bluefin tuna(Thunnus thynnus)

(2013) Jean-Marc Fromentin et al.   FISHERIES OCEANOGRAPHY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

A Standardized Terminology for Describing Reproductive Development in Fishes

(2012) Nancy J. Brown-Peterson et al.   Marine and Coastal Fisheries

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

GnRHa-induced spawning in cage-reared Atlantic bluefin tuna: An evaluation using stereological quantification of ovarian post-ovulatory follicles

(2011) Guillermo Aranda et al.   AQUACULTURE

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Predicting the effects of climate change on bluefin tuna (Thunnus thynnus) spawning habitat in the Gulf of Mexico

(2011) B. A. Muhling et al.   ICES JOURNAL OF MARINE SCIENCE

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

High Value and Long Life—Double Jeopardy for Tunas and Billfishes

(2011) B. B. Collette et al.   SCIENCE

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Complex migration routes of Atlantic bluefin tuna (Thunnus thynnus) question current population structure paradigm

(2010) Benjamin Galuardi et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Marine genetic swamping: hybrids replace an obligately estuarine fish

(2010) DAVID G. ROBERTS et al.   MOLECULAR ECOLOGY

What can genetics tell us about population connectivity?

(2010) WINSOR H. LOWE et al.   MOLECULAR ECOLOGY

Characterization of the spawning habitat of Atlantic bluefin tuna and related species in the Balearic Sea (western Mediterranean)

(2010) F. Alemany et al.   PROGRESS IN OCEANOGRAPHY

Facts and uncertainties about the genetic population structure of Atlantic bluefin tuna (Thunnus thynnus) in the Mediterranean. Implications for fishery management

(2010) Jordi Viñas et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Lessons from the past: investigating historical data from bluefin tuna fisheries

(2009) Jean-Marc Fromentin   FISH AND FISHERIES

Genetic population structure of marine fish: mismatch between biological and fisheries management units

(2009) Henning Reiss et al.   FISH AND FISHERIES

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing

(2009) Rob J. Kulathinal et al.   PLoS Genetics

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

The dangers of ignoring stock complexity in fishery management: the case of the North Sea cod

(2008) W. F. Hutchinson   Biology Letters

Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Evidence of trans-Atlantic movement and natal homing of bluefin tuna from stable isotopes in otoliths

(2008) JR Rooker et al.   MARINE ECOLOGY PROGRESS SERIES