Unlocking the potential of ancient fish DNA in the genomic era

Haplotype Sharing Provides Insights into Fine-Scale Population History and Disease in Finland

(2018) Alicia R. Martin et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A stainless-steel mortar, pestle and sleeve design for the efficient fragmentation of ancient bone

(2018) Agata T Gondek et al.   BIOTECHNIQUES

Ancient DNA analysis of Indigenous rockfish use on the Pacific Coast: Implications for marine conservation areas and fisheries management

(2018) Antonia T. Rodrigues et al.   PLoS One

An efficient and reliable DNA-based sex identification method for archaeological Pacific salmonid (Oncorhynchus spp.) remains

(2018) Thomas C. A. Royle et al.   PLoS One

Increased mitochondrial DNA diversity in ancient Columbia River basin Chinook salmon Oncorhynchus tshawytscha

(2018) Bobbi M. Johnson et al.   PLoS One

Subsistence practices, past biodiversity, and anthropogenic impacts revealed by New Zealand-wide ancient DNA survey

(2018) Frederik V. Seersholm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multi-analytical approach to zooarchaeological assemblages elucidates Late Holocene coastal lifeways in southwest Madagascar

(2018) Kristina Douglass et al.   QUATERNARY INTERNATIONAL

Synergistic Integration of Genomics and Ecoevolutionary Dynamics for Sustainable Fisheries: A Reply to Kuparinen and Uusi-Heikkilä

(2018) Louis Bernatchez et al.   TRENDS IN ECOLOGY & EVOLUTION

Quantifying Temporal Genomic Erosion in Endangered Species

(2018) David Díez-del-Molino et al.   TRENDS IN ECOLOGY & EVOLUTION

Population genetic signatures of a climate change driven marine range extension

(2018) Jorge E. Ramos et al.   Scientific Reports

A guide to ancient protein studies

(2018) Jessica Hendy et al.   Nature Ecology & Evolution

Species identification of ancient Lithuanian fish remains using collagen fingerprinting

(2018) Virginia L. Harvey et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

A Climate-Driven Functional Inversion of Connected Marine Ecosystems

(2018) Matthew McLean et al.   CURRENT BIOLOGY

Human use of small forage fish: Improved ancient DNA species identification techniques reveal long term record of sustainable mass harvesting of smelt fishery in the northeast Pacific Rim

(2018) Erica Palmer et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Ancient DNA: The quest for the best

(2018) Eva-Maria Geigl et al.   Molecular Ecology Resources

Ancient DNA analysis of cyprinid remains from the Mesolithic-Neolithic Danube Gorges reveals an extirpated fish species Rutilus frisii (Nordmann, 1840)

(2017) Ivana Živaljević et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Fifteen years of quantitative trait loci studies in fish: challenges and future directions

(2017) David T. Ashton et al.   MOLECULAR ECOLOGY

Genome architecture enables local adaptation of Atlantic cod despite high connectivity

(2017) Julia M. I. Barth et al.   MOLECULAR ECOLOGY

Tracing the peopling of the world through genomics

(2017) Rasmus Nielsen et al.   NATURE

Using ancient DNA to unravel taxonomic puzzles: the identity of Deuterodon pedri (Ostariophysi: Characidae)

(2017) Priscilla C. Silva et al.   Neotropical Ichthyology

Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany

(2017) Bastiaan Star et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparing Ancient DNA Preservation in Petrous Bone and Tooth Cementum

(2017) Henrik B. Hansen et al.   PLoS One

Reconstruction of the historical distribution of sturgeons (Acipenseridae) in the eastern North Atlantic based on ancient DNA and bone morphology of archaeological remains: implications for conservation and restoration programmes

(2016) Elena A. Nikulina et al.   DIVERSITY AND DISTRIBUTIONS

Range shifts or extinction? Ancient DNA and distribution modelling reveal past and future responses to climate warming in cold-adapted birds

(2016) Vendela K. Lagerholm et al.   GLOBAL CHANGE BIOLOGY

Tropical ancient DNA from bulk archaeological fish bone reveals the subsistence practices of a historic coastal community in southwest Madagascar

(2016) Alicia Grealy et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Can estimates of genetic effective population size contribute to fisheries stock assessments?

(2016) J. R. Ovenden et al.   JOURNAL OF FISH BIOLOGY

Next-generation biology: Sequencing and data analysis approaches for non-model organisms

(2016) Rute R. da Fonseca et al.   Marine Genomics

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

(2016) Bernd Hänfling et al.   MOLECULAR ECOLOGY

Combining bleach and mild predigestion improves ancient DNA recovery from bones

(2016) Sanne Boessenkool et al.   Molecular Ecology Resources

The Effects of Paleoclimatic Events on Mediterranean Trout: Preliminary Evidences from Ancient DNA

(2016) Andrea Splendiani et al.   PLoS One

Fisheries-Induced Evolution

(2015) Mikko Heino et al.   Annual Review of Ecology Evolution and Systematics

Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth

(2015) Eleftheria Palkopoulou et al.   CURRENT BIOLOGY

A critical evaluation of how ancient DNA bulk bone metabarcoding complements traditional morphological analysis of fossil assemblages

(2015) Alicia C. Grealy et al.   QUATERNARY SCIENCE REVIEWS

Post-glacial dispersal patterns of Northern pike inferred from an 8800 year old pike (Esox cf. lucius) skull from interior Alaska

(2015) Matthew J. Wooller et al.   QUATERNARY SCIENCE REVIEWS

Conservation archaeogenomics: ancient DNA and biodiversity in the Anthropocene

(2015) Courtney A. Hofman et al.   TRENDS IN ECOLOGY & EVOLUTION

Improving access to endogenous DNA in ancient bones and teeth

(2015) Peter B. Damgaard et al.   Scientific Reports

The globalization of naval provisioning: ancient DNA and stable isotope analyses of stored cod from the wreck of the Mary Rose, AD 1545

(2015) William F. Hutchinson et al.   Royal Society Open Science

Ocean's eleven: a critical evaluation of the role of population, evolutionary and molecular genetics in the management of wild fisheries

(2015) Jennifer R Ovenden et al.   FISH AND FISHERIES

Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone

(2015) Ron Pinhasi et al.   PLoS One

The future of ancient DNA: Technical advances and conceptual shifts

(2014) Michael Hofreiter et al.   BIOESSAYS

Archaeological Evidence of Validity of Fish Populations on Unexploited Reefs as Proxy Targets for Modern Populations

(2014) KEN LONGENECKER et al.   CONSERVATION BIOLOGY

Occurrence of lungfish in the Brisbane River, Queensland, Australia dates back to 3850 yr BP

(2014) Anne Kemp et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Using palaeoenvironmental DNA to reconstruct past environments: progress and prospects

(2014) NICOLAS J. RAWLENCE et al.   JOURNAL OF QUATERNARY SCIENCE

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

Ancient and modern environmental DNA

(2014) Mikkel Winther Pedersen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Historical DNA reveals the demographic history of Atlantic cod (Gadus morhua) in medieval and early modern Iceland

(2014) G. A. Olafsdottir et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Extinction and recolonization of coastal megafauna following human arrival in New Zealand

(2014) C. J. Collins et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Resurrecting Surviving Neandertal Lineages from Modern Human Genomes

(2014) B. Vernot et al.   SCIENCE

Genome flux and stasis in a five millennium transect of European prehistory

(2014) Cristina Gamba et al.   Nature Communications

Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries

(2013) Meredith L. Carpenter et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic codGadus morhua

(2013) Nina Overgaard Therkildsen et al.   Evolutionary Applications

Microevolution in time and space: SNP analysis of historical DNA reveals dynamic signatures of selection in Atlantic cod

(2013) Nina O. Therkildsen et al.   MOLECULAR ECOLOGY

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

(2013) Ilaria Milano et al.   MOLECULAR ECOLOGY

Meta-analysis reveals lower genetic diversity in overfished populations

(2013) Malin L. Pinsky et al.   MOLECULAR ECOLOGY

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thorough assessment of DNA preservation from fossil bone and sediments excavated from a late Pleistocene–Holocene cave deposit on Kangaroo Island, South Australia

(2013) Dalal Haouchar et al.   QUATERNARY SCIENCE REVIEWS

Global imprint of climate change on marine life

(2013) Elvira S. Poloczanska et al.   Nature Climate Change

Scrapheap Challenge: A novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages

(2013) Dáithí C. Murray et al.   Scientific Reports

Using ancient DNA identification and osteometric measures of archaeological Pacific salmon vertebrae for reconstructing salmon fisheries and site seasonality at Dionisio Point, British Columbia

(2012) Colin Grier et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Historical stocking data and 19th century DNA reveal human-induced changes to native diversity and distribution of cutthroat trout

(2012) J. L. Metcalf et al.   MOLECULAR ECOLOGY

High Potential for Using DNA from Ancient Herring Bones to Inform Modern Fisheries Management and Conservation

(2012) Camilla F. Speller et al.   PLoS One

High-latitude climate variability and its effect on fisheries resources as revealed by fossil cod otoliths

(2011) Audrey J. Geffen et al.   ICES JOURNAL OF MARINE SCIENCE

Addressing seasonal site use through ancient DNA species identification of Pacific salmon at Dionisio Point, Galiano Island, British Columbia

(2011) Paul A. Ewonus et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Faunal histories from Holocene ancient DNA

(2011) Mark de Bruyn et al.   TRENDS IN ECOLOGY & EVOLUTION

Direct DNA Amplification from Crude Clinical Samples Using a PCR Enhancer Cocktail and Novel Mutants of Taq

(2010) Zhian Zhang et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Ancient mitochondrial DNA analyses of Iberian sturgeons

(2009) A. Ludwig et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Historical presence of the sturgeon Acipenser sturio in the Rhône basin determined by the analysis of ancient DNA cytochrome b sequences

(2008) Marie Pagès et al.   CONSERVATION GENETICS

Genetic effects of harvest on wild animal populations

(2008) F ALLENDORF et al.   TRENDS IN ECOLOGY & EVOLUTION

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS