An omics strategy increasingly improves the discovery of genetic loci and genes for seed-coat color formation in soybean

Genomic Studies of Plant-Environment Interactions

(2022) Man-Wah Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of genetic loci conferring seed coat color based on a high-density map in soybean

(2022) Baoqi Yuan et al.   Frontiers in Plant Science

Genome-Wide Analysis of the ERF Family and Identification of Potential Genes Involved in Fruit Ripening in Octoploid Strawberry

(2022) Yunting Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide signatures of the geographic expansion and breeding of soybean

(2022) Ying-Hui Li et al.   Science China-Life Sciences

ERF49 mediates brassinosteroid regulation of heat stress tolerance in Arabidopsis thaliana

(2022) Xia Chen et al.   BMC BIOLOGY

Linkage and association study discovered loci and candidate genes for glycinin and β-conglycinin in soybean (Glycine max L. Merr.)

(2021) Shanshan Zhang et al.   THEORETICAL AND APPLIED GENETICS

MYB transcription factors GmMYBA2 and GmMYBR function in a feedback loop to control pigmentation of seed coat in soybean

(2021) Ruifang Gao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic variance and transcriptional regulation modulate terpenoid biosynthesis in trichomes of Nicotiana tabacum under drought

(2021) Jing Wang et al.   INDUSTRIAL CROPS AND PRODUCTS

Seed coat color genetics and genotype × environment effects in yellow beans via machine‐learning and genome‐wide association

(2021) Rie Sadohara et al.   Plant Genome

The current status of research on gibberellin biosynthesis

(2020) Peter Hedden   PLANT AND CELL PHYSIOLOGY

Dissecting seed pigmentation-associated genomic loci and genes by employing dual approaches of reference-based and k-mer-based GWAS with 438 Glycine accessions

(2020) Jin-Hyun Kim et al.   PLoS One

A reference-grade wild soybean genome

(2019) Min Xie et al.   Nature Communications

Identification of anthocyanin biosynthesis genes in rice pericarp using PCAMP

(2019) Xinghai Yang et al.   PLANT BIOTECHNOLOGY JOURNAL

Carotenoids as natural functional pigments

(2019) Takashi Maoka   Journal of Natural Medicines

Genomic Variance and Transcriptional Comparisons Reveal the Mechanisms of Leaf Color Affecting Palatability and Stressed Defense in Tea Plant

(2019) Xuewen Wang et al.   Genes

Ascorbic acid metabolism and functions: A comparison of plants and mammals

(2018) Nicholas Smirnoff   FREE RADICAL BIOLOGY AND MEDICINE

White seed color in common bean (Phaseolus vulgaris ) results from convergent evolution in the P (pigment ) gene

(2018) Phillip E. McClean et al.   NEW PHYTOLOGIST

Parallel selection on a dormancy gene during domestication of crops from multiple families

(2018) Min Wang et al.   NATURE GENETICS

‘Hidden’ Terpenoids in Plants: Their Biosynthesis, Localization and Ecological Roles

(2017) Kazufumi Yazaki et al.   PLANT AND CELL PHYSIOLOGY

Mutations in Argonaute5 Illuminate Epistatic Interactions of the K1 and I Loci Leading to Saddle Seed Color Patterns in Glycine max

(2017) Young B. Cho et al.   PLANT CELL

An Induced Chromosomal Translocation in Soybean Disrupts a KASI Ortholog and Is Associated with a High-Sucrose and Low-Oil Seed Phenotype

(2017) Austin A. Dobbels et al.   G3-Genes Genomes Genetics

Anthocyanidins and anthocyanins: colored pigments as food, pharmaceutical ingredients, and the potential health benefits

(2017) Hock Eng Khoo et al.   Food & Nutrition Research

Next-Generation Sequencing from Bulked-Segregant Analysis Accelerates the Simultaneous Identification of Two Qualitative Genes in Soybean

(2017) Jian Song et al.   Frontiers in Plant Science

Identification and Validation of Loci Governing Seed Coat Color by Combining Association Mapping and Bulk Segregation Analysis in Soybean

(2016) Jian Song et al.   PLoS One

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybean

(2015) Lianjun Sun et al.   NATURE GENETICS

Anthocyanins

(2015) Taylor C Wallace et al.   Advances in Nutrition

Anthocyanins. Plant Pigments and Beyond

(2014) Celestino Santos-Buelga et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A Green-Cotyledon/Stay-Green Mutant Exemplifies the Ancient Whole-Genome Duplications in Soybean

(2014) Michiharu Nakano et al.   PLANT AND CELL PHYSIOLOGY

Identification of loci governing eight agronomic traits using a GBS-GWAS approach and validation by QTL mapping in soya bean

(2014) Humira Sonah et al.   PLANT BIOTECHNOLOGY JOURNAL

Methylation Affects Transposition and Splicing of a Large CACTA Transposon from a MYB Transcription Factor Regulating Anthocyanin Synthase Genes in Soybean Seed Coats

(2014) Gracia Zabala et al.   PLoS One

Comparative analysis of the inverted repeat of a chalcone synthase pseudogene between yellow soybean and seed coat pigmented mutants

(2013) Mineo Senda et al.   BREEDING SCIENCE

MMAPPR: Mutation Mapping Analysis Pipeline for Pooled RNA-seq

(2013) J. T. Hill et al.   GENOME RESEARCH

Concerted evolution ofD1andD2to regulate chlorophyll degradation in soybean

(2013) Chao Fang et al.   PLANT JOURNAL

The Transition from Primary siRNAs to Amplified Secondary siRNAs That Regulate Chalcone Synthase During Development of Glycine max Seed Coats

(2013) Young B. Cho et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats

(2011) Jason D Gillman et al.   BMC PLANT BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genetic Analysis of Genes Controlling Natural Variation of Seed Coat and Flower Colors in Soybean

(2010) Kiwoung Yang et al.   JOURNAL OF HEREDITY

Tomato Analyzer: A Useful Software Application to Collect Accurate and Detailed Morphological and Colorimetric Data from Two-dimensional Objects

(2010) Gustavo R. Rodríguez et al.   Jove-Journal of Visualized Experiments

Arabidopsis WRKY2 transcription factor mediates seed germination and postgermination arrest of development by abscisic acid

(2009) Wenbo Jiang et al.   BMC PLANT BIOLOGY

Endogenous, Tissue-Specific Short Interfering RNAs Silence the Chalcone Synthase Gene Family in Glycine max Seed Coats

(2009) J. H. Tuteja et al.   PLANT CELL