Comparative genotyping of SARS-CoV-2 among Egyptian patients: near-full length genomic sequences versus selected spike and nucleocapsid regions

Genomic Diversity of SARS-CoV-2 in Algeria and North African Countries: What We Know So Far and What We Expect?

(2022) Taha Menasria et al.   Microorganisms

Incidence, household transmission, and neutralizing antibody seroprevalence of Coronavirus Disease 2019 in Egypt: Results of a community-based cohort

(2021) Mokhtar R. Gomaa et al.   PLoS Pathogens

The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology

(2021) Bas B. Oude Munnink et al.   NATURE MEDICINE

Recombinant SARS-CoV-2 Genomes Circulated at Low Levels Over The First Year of The Pandemic

(2021) David VanInsberghe et al.   Virus Evolution

Assignment of Epidemiological Lineages in an Emerging Pandemic Using the Pangolin Tool

(2021) Áine O’Toole et al.   Virus Evolution

Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2

(2021) Dalang Yu et al.   BRIEFINGS IN BIOINFORMATICS

Characterization of the SARS-CoV-2 genomes in Egypt in first and second waves of infection

(2021) Abdel-Rahman N. Zekri et al.   Scientific Reports

A new coronavirus associated with human respiratory disease in China

(2020) Fan Wu et al.   NATURE

SARS-CoV-2/COVID-19: Viral Genomics, Epidemiology, Vaccines, and Therapeutic Interventions

(2020) Mohammed Uddin et al.   Viruses-Basel

COVID-19 in Egypt: Uncovered figures or a different situation?

(2020) Mohammed A Medhat et al.   Journal of Global Health

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR

(2020) Shuhui Song et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

GISAID: Global initiative on sharing all influenza data – from vision to reality

(2017) Yuelong Shu et al.   Eurosurveillance

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

pROC: an open-source package for R and S+ to analyze and compare ROC curves

(2011) Xavier Robin et al.   BMC BIOINFORMATICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS