A first annotated genome sequence for Haliotis midae with genomic insights into abalone evolution and traits of economic importance

The importance of alternative splicing in adaptive evolution

(2022) Pooja Singh et al.   MOLECULAR ECOLOGY

A Draft Reference Genome Assembly of the Critically Endangered Black Abalone, Haliotis cracherodii

(2022) Chloé Orland et al.   JOURNAL OF HEREDITY

Alternative splicing as a source of phenotypic diversity

(2022) Charlotte J. Wright et al.   NATURE REVIEWS GENETICS

A draft reference genome of the red abalone, Haliotis rufescens, for conservation genomics

(2022) Joanna S Griffiths et al.   JOURNAL OF HEREDITY

Novel insights into the evolution of genome size and AT content in mollusks

(2021) Kenta Adachi et al.   MARINE BIOLOGY

An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa ( Knightia excelsa) genome

(2021) Ann M. McCartney et al.   Molecular Ecology Resources

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

(2021) Mosè Manni et al.   MOLECULAR BIOLOGY AND EVOLUTION

Construction of a Genetic Linkage Map Based on SNP Markers, QTL Mapping and Detection of Candidate Genes of Growth-Related Traits in Pacific Abalone Using Genotyping-by-Sequencing

(2021) Kang Hee Kho et al.   Frontiers in Marine Science

Omics research on abalone (Haliotis spp.): Current state and perspectives

(2021) Thao V. Nguyen et al.   AQUACULTURE

Preliminary investigation demonstrating the GHITM gene probably involved in apoptosis and growth of the golden apple snail (Pomacea canaliculata)

(2020) Wenchao Yu et al.   BMC GENOMICS

Abalone Recruitment in Low-Density and Aggregated Populations Facing Climatic Stress

(2020) Leslie C. Hart et al.   JOURNAL OF SHELLFISH RESEARCH

Molecular and evolutionary processes generating variation in gene expression

(2020) Mark S. Hill et al.   NATURE REVIEWS GENETICS

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

(2019) Sarah Goldstein et al.   BMC GENOMICS

An Annotated Genome for Haliotis rufescens (Red Abalone) and Resequenced Green, Pink, Pinto, Black and White Abalone Species

(2019) Rick Masonbrink et al.   Genome Biology and Evolution

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

Genetic variation in human gene regulatory factors uncovers regulatory roles in local adaptation and disease

(2019) Álvaro Perdomo-Sabogal et al.   Genome Biology and Evolution

Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)

(2019) Han Ming Gan et al.   Frontiers in Genetics

Ocean acidification impacts growth and shell mineralization in juvenile abalone (Haliotis tuberculata)

(2019) Stéphanie Auzoux-Bordenave et al.   MARINE BIOLOGY

Characterising the metabolic differences related to growth variation in farmed Haliotis midae

(2018) Leonie Venter et al.   AQUACULTURE

OUP accepted manuscript

(2018)   BIOINFORMATICS

Withering syndrome susceptibility of northeastern Pacific abalones: A complex relationship with phylogeny and thermal experience

(2018) Lisa M. Crosson et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Identification and characteristics of muscle growth-related microRNA in the Pacific abalone, Haliotis discus hannai

(2018) Jianfang Huang et al.   BMC GENOMICS

Devastating farmed abalone mortalities attributed to yessotoxin-producing dinoflagellates

(2018) Grant C. Pitcher et al.   HARMFUL ALGAE

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Gene Regulation and Speciation

(2017) Katya L. Mack et al.   TRENDS IN GENETICS

Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae

(2017) Bo-Hye Nam et al.   GigaScience

Genetic mapping and quantitative trait loci analysis of growth-related traits in the small abalone Haliotis diversicolor using restriction-site-associated DNA sequencing

(2016) Peng Ren et al.   AQUACULTURE

An assessment of spatio-temporal genetic variation in the South African abalone (Haliotis midae), using SNPs: implications for conservation management

(2016) Clint Rhode et al.   CONSERVATION GENETICS

Studying the genetic basis of speciation in high gene flow marine invertebrates

(2016) Grant H. Pogson   Current Zoology

An Assessment of Hatchery Cohort Growth Rates of South African Abalone,Haliotis midae, Across Four Commercial Environments

(2016) Arnold C. Vlok et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Epigenetic divergence as a potential first step in darter speciation

(2016) Tracy A. Smith et al.   MOLECULAR ECOLOGY

Abalone growth and associated aspects: now from a metabolic perspective

(2016) Leonie Venter et al.   Reviews in Aquaculture

Studying the genetic basis of speciation in high gene flow marine invertebrates

(2016) Grant H. Pogson   Current Zoology

How might epigenetics contribute to ecological speciation?

(2016) Gilbert Smith et al.   Current Zoology

Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix

(2015) Barbara Feldmeyer et al.   BMC EVOLUTIONARY BIOLOGY

Global gene expression patterns of grass carp following compensatory growth

(2015) Libo He et al.   BMC GENOMICS

RNA Sequencing Identifies Upregulated Kyphoscoliosis Peptidase and Phosphatidic Acid Signaling Pathways in Muscle Hypertrophy Generated by Transgenic Expression of Myostatin Propeptide

(2015) Yuanxin Miao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Differentially-Expressed Genes Associated with Faster Growth of the Pacific Abalone, Haliotis discus hannai

(2015) Mi-Jin Choi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome profiles of wild and cultured South African abalone, Haliotis midae

(2015) Barbara Picone et al.   Marine Genomics

Changes of heritability and genetic correlations in production traits over time in red abalone (Haliotis rufescens) under culture

(2014) Katherina B Brokordt et al.   AQUACULTURE RESEARCH

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

Comparative studies of gene regulatory mechanisms

(2014) Athma A Pai et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Sequencing depth and coverage: key considerations in genomic analyses

(2014) David Sims et al.   NATURE REVIEWS GENETICS

Ecological and evolutionary significance of genomic GC content diversity in monocots

(2014) Petr Šmarda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

(2014) Marc Bailly-Bechet et al.   Mobile DNA

Survival and Growth of Red Abalone (Haliotis rufescens) Postlarvae Under Different Static and Flow Conditions

(2013) Casandra Anguiano-Beltrán et al.   JOURNAL OF SHELLFISH RESEARCH

Integrated Linkage Map ofHaliotis midaeLinnaeus Based on Microsatellite and SNP Markers

(2013) Jessica Vervalle et al.   JOURNAL OF SHELLFISH RESEARCH

Growth rates of Haliotis rufescens and Haliotis discus hannai in tank culture systems in southern Chile (41.5ºS)

(2013) Alfonso Mardones et al.   Latin American Journal of Aquatic Research

Detection of molecular signatures of selection at microsatellite loci in the South African abalone (Haliotis midae) using a population genomic approach

(2013) Clint Rhode et al.   Marine Genomics

Molecular phylogeny of South African abalone, its origin and evolution as revealed by two genes

(2012) Aletta Elizabeth Bester-van der Merwe et al.   Marine Biology Research

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Karyotype and Genome Size Estimation ofHaliotis midae: Estimators to Assist Future Studies on the Evolutionary History of Haliotidae

(2011) Paolo Franchini et al.   JOURNAL OF SHELLFISH RESEARCH

Reproduction, Fecundity, and Growth of Abalone (Haliotis Tuberculata Coccinea, Reeve 1846) in the Canary Islands

(2011) Amaia Bilbao et al.   JOURNAL OF SHELLFISH RESEARCH

Differential Growth-Related Gene Expression in Abalone (Haliotis midae)

(2011) Mathilde van der Merwe et al.   MARINE BIOTECHNOLOGY

What do we need to know about speciation?

(2011)   TRENDS IN ECOLOGY & EVOLUTION

The role of gene expression in ecological speciation

(2010) Scott A. Pavey et al.   Annals of the New York Academy of Sciences

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Sperm associated antigen 8 (SPAG8), a novel regulator of activator of CREM in testis during spermatogenesis

(2010) Hongyu Wu et al.   FEBS LETTERS

Heritability of Growth Traits for Small AbaloneHaliotis diversicolorEstimated from sib Matings

(2010) Weiwei You et al.   JOURNAL OF SHELLFISH RESEARCH

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Aquaculture Production and Biodiversity Conservation

(2009) James S. Diana   BIOSCIENCE

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The G protein-coupled receptor FSHR-1 is required for theCaenorhabditis elegansinnate immune response

(2009) Jennifer R. Powell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA