Two Different High Throughput Sequencing Approaches Identify Thousands of De Novo Genomic Markers for the Genetically Depleted Bornean Elephant

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

(2011) Robert HS Kraus et al.   BMC GENOMICS

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

(2011) Yada Chutimanitsakun et al.   BMC GENOMICS

Rapid Mapping and Identification of Mutations inCaenorhabditis elegansby Restriction Site-Associated DNA Mapping and Genomic Interval Pull-Down Sequencing

(2011) Sean M. O’Rourke et al.   GENETICS

Rise of the machines - recommendations for ecologists when using next generation sequencing for microsatellite development

(2011) MICHAEL G. GARDNER et al.   Molecular Ecology Resources

Discovery of single-nucleotide polymorphisms (SNPs) in the uncharacterized genome of the ascomycete Ophiognomonia clavigignenti-juglandacearum from 454 sequence data

(2011) K. D. BRODERS et al.   Molecular Ecology Resources

Unlocking the potential of genomic technologies for wildlife forensics

(2011) ROB OGDEN   Molecular Ecology Resources

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

(2011) J. E. SEEB et al.   Molecular Ecology Resources

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

SNP identification, verification, and utility for population genetics in a non-model genus

(2010) Larissa M Williams et al.   BMC GENETICS

Rapid Microsatellite Development for Water Striders by Next-Generation Sequencing

(2010) Jen C. Perry et al.   JOURNAL OF HEREDITY

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonusspp. Salmonidae)

(2010) SÉBASTIEN RENAUT et al.   MOLECULAR ECOLOGY

Genome-wide SNP detection in the great titParus majorusing high throughput sequencing

(2010) NIKKIE E. M. VAN BERS et al.   MOLECULAR ECOLOGY

PEAS V1.0: a package for elementary analysis of SNP data

(2010) SHUHUA XU et al.   Molecular Ecology Resources

Application of single nucleotide polymorphisms to non-model species: a technical review

(2010) M. R. GARVIN et al.   Molecular Ecology Resources

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing

(2009) Jawad Abdelkrim et al.   BIOTECHNIQUES

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

(2009) Hindrik HD Kerstens et al.   BMC GENOMICS

SNP discovery based on CATS and genotyping in the finless porpoise (Neophocaena phocaenoides)

(2009) Shuzhen Li et al.   CONSERVATION GENETICS

Five hundred microsatellite loci for Peromyscus

(2009) Jesse N. Weber et al.   CONSERVATION GENETICS

Assessing statistical power of SNPs for population structure and conservation studies

(2009) PHILLIP A. MORIN et al.   Molecular Ecology Resources

Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence

(2009) TODD A. CASTOE et al.   Molecular Ecology Resources

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection

(2008) Thomas Moen et al.   BMC GENETICS

SNP discovery in swine by reduced representation and high throughput pyrosequencing

(2008) Ralph T Wiedmann et al.   BMC GENETICS

Gene mapping in the wild with SNPs: guidelines and future directions

(2008) Jon Slate et al.   GENETICA

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Fourteen new di- and tetranucleotide microsatellite loci for the critically endangered Indian tiger (Panthera tigris tigris)

(2008) R. SHARMA et al.   Molecular Ecology Resources

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Isolation of 15 single nucleotide polymorphisms from coastal steelhead, Oncorhynchus mykiss (Salmonidae)

(2007) ANDRES AGUILAR et al.   Molecular Ecology Resources

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design

(2007) BRANT C. FAIRCLOTH   Molecular Ecology Resources