Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks
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Title
Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume 25, Issue 4, Pages 943-958
Publisher
Wiley
Online
2016-01-10
DOI
10.1111/mec.13520
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Related references
Note: Only part of the references are listed.- Lake-Stream Divergence in Stickleback Life History: A Plastic Response to Trophic Niche Differentiation?
- (2015) Dario Moser et al. Evolutionary Biology
- Transcription in space - environmental vs. genetic effects on differential immune gene expression
- (2015) Tobias L. Lenz MOLECULAR ECOLOGY
- Among-lake reciprocal transplants induce convergent expression of immune genes in threespine stickleback
- (2015) William E. Stutz et al. MOLECULAR ECOLOGY
- Genomics of Divergence along a Continuum of Parapatric Population Differentiation
- (2015) Philine G. D. Feulner et al. PLoS Genetics
- Divergent Macroparasite Infections in Parapatric Swiss Lake-Stream Pairs of Threespine Stickleback (Gasterosteus aculeatus)
- (2015) Anssi Karvonen et al. PLoS One
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- SPECIES-SPECIFIC DIFFERENCES IN ADAPTIVE PHENOTYPIC PLASTICITY IN AN ECOLOGICALLY RELEVANT TROPHIC TRAIT: HYPERTROPHIC LIPS IN MIDAS CICHLID FISHES
- (2014) Gonzalo Machado-Schiaffino et al. EVOLUTION
- NLRC3, a Member of the NLR Family of Proteins, Is a Negative Regulator of Innate Immune Signaling Induced by the DNA Sensor STING
- (2014) Lu Zhang et al. IMMUNITY
- Contemporary ecotypic divergence during a recent range expansion was facilitated by adaptive introgression
- (2014) K. Lucek et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- The Evolution and Adaptive Potential of Transcriptional Variation in Sticklebacks—Signatures of Selection and Widespread Heritability
- (2014) Erica H. Leder et al. MOLECULAR BIOLOGY AND EVOLUTION
- Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback
- (2014) Matthew R. J. Morris et al. MOLECULAR ECOLOGY
- Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity
- (2014) Daniel I. Bolnick et al. MOLECULAR ECOLOGY
- Specific Gene Expression Responses to Parasite Genotypes Reveal Redundancy of Innate Immunity in Vertebrates
- (2014) David Haase et al. PLoS One
- Extensive Copy-Number Variation of Young Genes across Stickleback Populations
- (2014) Frédéric J. J. Chain et al. PLoS Genetics
- PARALLEL EVOLUTION OF LOCAL ADAPTATION AND REPRODUCTIVE ISOLATION IN THE FACE OF GENE FLOW
- (2013) Roger K. Butlin et al. EVOLUTION
- Gene expression drives local adaptation in humans
- (2013) H. B. Fraser GENOME RESEARCH
- Impacts of Variation in the Human Genome on Gene Regulation
- (2013) Rajini R. Haraksingh et al. JOURNAL OF MOLECULAR BIOLOGY
- The zebrafish reference genome sequence and its relationship to the human genome
- (2013) Kerstin Howe et al. NATURE
- Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
- (2013) Simon Anders et al. Nature Protocols
- Ecological genomics of local adaptation
- (2013) Outi Savolainen et al. NATURE REVIEWS GENETICS
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
- (2012) M.-A. Dillies et al. BRIEFINGS IN BIOINFORMATICS
- Convergent Evolution within an Adaptive Radiation of Cichlid Fishes
- (2012) Moritz Muschick et al. CURRENT BIOLOGY
- Divergent selection on locally adapted major histocompatibility complex immune genes experimentally proven in the field
- (2012) Christophe Eizaguirre et al. ECOLOGY LETTERS
- Genome-wide Association Study of Periodontal Pathogen Colonization
- (2012) K. Divaris et al. JOURNAL OF DENTAL RESEARCH
- Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation
- (2012) A. Whitehead JOURNAL OF EXPERIMENTAL BIOLOGY
- Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua
- (2012) Tereza Manousaki et al. MOLECULAR ECOLOGY
- Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis
- (2012) Tobias L. Lenz et al. MOLECULAR ECOLOGY
- Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs
- (2012) MARIUS ROESTI et al. MOLECULAR ECOLOGY
- The ecological and genetic basis of convergent thick-lipped phenotypes in cichlid fishes
- (2012) Marco Colombo et al. MOLECULAR ECOLOGY
- The innate immune sensor NLRC3 attenuates Toll-like receptor signaling via modification of the signaling adaptor TRAF6 and transcription factor NF-κB
- (2012) Monika Schneider et al. NATURE IMMUNOLOGY
- Rapid and adaptive evolution of MHC genes under parasite selection in experimental vertebrate populations
- (2012) Christophe Eizaguirre et al. Nature Communications
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- PARALLEL AND NONPARALLEL ASPECTS OF ECOLOGICAL, PHENOTYPIC, AND GENETIC DIVERGENCE ACROSS REPLICATE POPULATION PAIRS OF LAKE AND STREAM STICKLEBACK
- (2011) Renaud Kaeuffer et al. EVOLUTION
- Ensembl 2012
- (2011) P. Flicek et al. NUCLEIC ACIDS RESEARCH
- Are fish immune systems really affected by parasites? an immunoecological study of common carp (Cyprinus carpio)
- (2011) Karolína Rohlenová et al. Parasites & Vectors
- Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species
- (2011) S. U. Franssen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions
- (2011) B. E. Deagle et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The Developmental Role of Agouti in Color Pattern Evolution
- (2011) M. Manceau et al. SCIENCE
- The evolution of gene expression and the transcriptome–phenotype relationship
- (2011) Peter W. Harrison et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Adaptation in the age of ecological genomics: insights from parallelism and convergence
- (2011) Kathryn R. Elmer et al. TRENDS IN ECOLOGY & EVOLUTION
- Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka)
- (2011) Scott A Pavey et al. BMC ECOLOGY
- The role of gene expression in ecological speciation
- (2010) Scott A. Pavey et al. Annals of the New York Academy of Sciences
- Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences
- (2010) Rita Gemayel et al. Annual Review of Genetics
- The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation
- (2010) Jonathan K. Pritchard et al. CURRENT BIOLOGY
- Parasite diversity, patterns of MHC II variation and olfactory based mate choice in diverging three-spined stickleback ecotypes
- (2010) Christophe Eizaguirre et al. EVOLUTIONARY ECOLOGY
- Constraints on speciation suggested by comparing lake-stream stickleback divergence across two continents
- (2010) DANIEL BERNER et al. MOLECULAR ECOLOGY
- A scaling normalization method for differential expression analysis of RNA-seq data
- (2010) Mark D Robinson et al. GENOME BIOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Identification of LRRc17 as a Negative Regulator of Receptor Activator of NF-κB Ligand (RANKL)-induced Osteoclast Differentiation
- (2009) Taesoo Kim et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Genetics of human gene expression: mapping DNA variants that influence gene expression
- (2009) Vivian G. Cheung et al. NATURE REVIEWS GENETICS
- Stepwise Modification of a Modular Enhancer Underlies Adaptation in a Drosophila Population
- (2009) M. Rebeiz et al. SCIENCE
- Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer
- (2009) Y. F. Chan et al. SCIENCE
- Speciation accelerated and stabilized by pleiotropic major histocompatibility complex immunogenes
- (2008) Christophe Eizaguirre et al. ECOLOGY LETTERS
- Natural selection drives patterns of lake-stream divergence in stickleback foraging morphology
- (2008) D. BERNER et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient
- (2008) ZACHARY A. CHEVIRON et al. MOLECULAR ECOLOGY
- The environmental contribution to gene expression profiles
- (2008) Greg Gibson NATURE REVIEWS GENETICS
- Revealing the architecture of gene regulation: the promise of eQTL studies
- (2008) Yoav Gilad et al. TRENDS IN GENETICS
- Adaptation from standing genetic variation
- (2007) R BARRETT et al. TRENDS IN ECOLOGY & EVOLUTION
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