Sperm competition shapes gene expression and sequence evolution in the ocellated wrasse

Tissue Specificity and Sex-Specific Regulatory Variation Permit the Evolution of Sex-Biased Gene Expression

(2016) Rebecca Dean et al.   AMERICAN NATURALIST

Sex-Biased Gene Expression

(2016) Sonja Grath et al.   Annual Review of Genetics

Inferring regulatory change from gene expression: the confounding effects of tissue scaling

(2016) Stephen H. Montgomery et al.   MOLECULAR ECOLOGY

Sexual Dimorphism and the Evolution of Sex-Biased Gene Expression in the Brown Alga Ectocarpus

(2015) Agnieszka Lipinska et al.   MOLECULAR BIOLOGY AND EVOLUTION

Positive Selection Underlies Faster-Z Evolution of Gene Expression in Birds

(2015) Rebecca Dean et al.   MOLECULAR BIOLOGY AND EVOLUTION

Variation in promiscuity and sexual selection drives avian rate of Faster-Z evolution

(2015) Alison E. Wright et al.   MOLECULAR ECOLOGY

Sexual selection drives evolution and rapid turnover of male gene expression

(2015) Peter W. Harrison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression change inAngiopoietin-1underlies change in relative brain size in fish

(2015) Yu-Chia Chen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transcriptome analyses and differential gene expression in a non-model fish species with alternative mating tactics

(2014) Celia Schunter et al.   BMC GENOMICS

Transcriptome assemblies for studying sex-biased gene expression in the guppy, Poecilia reticulata

(2014) Eshita Sharma et al.   BMC GENOMICS

Neural Gene Expression Profiles and Androgen Levels Underlie Alternative Reproductive Tactics in the Ocellated Wrasse,Symphodus ocellatus

(2014) Kelly A. Stiver et al.   ETHOLOGY

Accelerated Evolution of Morph-Biased Genes in Pea Aphids

(2014) Swapna R. Purandare et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution under monogamy feminizes gene expression in Drosophila melanogaster

(2014) Brian Hollis et al.   Nature Communications

Reduced selection and accumulation of deleterious mutations in genes exclusively expressed in men

(2014) Moran Gershoni et al.   Nature Communications

Alternative reproductive tactics and sex-biased gene expression: the study of the bulb mite transcriptome

(2014) Michal T. Stuglik et al.   Ecology and Evolution

Does the Risk of Sperm Competition Help Explain Cooperation between Reproductive Competitors? A Study in the Ocellated Wrasse (Symphodus ocellatus)

(2013) Kelly A. Stiver et al.   AMERICAN NATURALIST

Evolutionary Dynamics of Sex-Biased Genes in a Hermaphrodite Fungus

(2013) Carrie A. Whittle et al.   MOLECULAR BIOLOGY AND EVOLUTION

The plover neurotranscriptome assembly: transcriptomic analysis in an ecological model species without a reference genome

(2013) Hooman K. Moghadam et al.   Molecular Ecology Resources

The evolutionary causes and consequences of sex-biased gene expression

(2013) John Parsch et al.   NATURE REVIEWS GENETICS

Polyandry and sex-specific gene expression

(2013) J. E. Mank et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Masculinization of the X Chromosome in the Pea Aphid

(2013) Julie Jaquiéry et al.   PLoS Genetics

Masculinization of Gene Expression Is Associated with Exaggeration of Male Sexual Dimorphism

(2013) Marie A. Pointer et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Incomplete Sex Chromosome Dosage Compensation in the Indian Meal Moth, Plodia interpunctella, Based on De Novo Transcriptome Assembly

(2012) Peter W. Harrison et al.   Genome Biology and Evolution

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Comparative studies of gene expression and the evolution of gene regulation

(2012) Irene Gallego Romero et al.   NATURE REVIEWS GENETICS

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

W chromosome expression responds to female-specific selection

(2012) H. K. Moghadam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Mechanism of Extreme Growth and Reliable Signaling in Sexually Selected Ornaments and Weapons

(2012) D. J. Emlen et al.   SCIENCE

Function, Developmental Genetics, and Fitness Consequences of a Sexually Antagonistic Trait

(2012) A. Khila et al.   SCIENCE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Relaxed selection is a precursor to the evolution of phenotypic plasticity

(2011) B. G. Hunt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DEVELOPMENTAL DECOUPLING OF ALTERNATIVE PHENOTYPES: INSIGHTS FROM THE TRANSCRIPTOMES OF HORN-POLYPHENIC BEETLES

(2010) Emilie C. Snell-Rood et al.   EVOLUTION

Estimation of the Neutrality Index

(2010) N. Stoletzki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: Evidence for masculinization of the transcriptome

(2009) Clayton M Small et al.   BMC GENOMICS

The unexpected but understandable dynamics of mating, paternity and paternal care in the ocellated wrasse

(2009) S. H. Alonzo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Female mate choice copying affects sexual selection in wild populations of the ocellated wrasse

(2008) Suzanne H. Alonzo   ANIMAL BEHAVIOUR

SEXUAL SELECTION AND THE GENETIC MATING SYSTEM OF WILD TURKEYS

(2008) ALAN H. KRAKAUER   CONDOR

Controlling Type-I Error of the McDonald–Kreitman Test in Genomewide Scans for Selection on Noncoding DNA

(2008) Peter Andolfatto   GENETICS

Natural selection in avian protein-coding genes expressed in brain

(2008) ERIK AXELSSON et al.   MOLECULAR ECOLOGY

Low conservation of gene content in the Drosophila Y chromosome

(2008) Leonardo B. Koerich et al.   NATURE

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE