Metabarcoding reveals environmental factors influencing spatio-temporal variation in pelagic micro-eukaryotes

Genetic assessment of meiobenthic community composition and spatial distribution in coastal sediments along northern Gulf of Mexico

(2016) Pamela M. Brannock et al.   MARINE ENVIRONMENTAL RESEARCH

High-Throughput Sequencing Characterizes Intertidal Meiofaunal Communities in Northern Gulf of Mexico (Dauphin Island and Mobile Bay, Alabama)

(2016) Pamela M. Brannock et al.   BIOLOGICAL BULLETIN

Large-scale dinoflagellate bloom species Prorocentrum donghaiense and Karenia mikimotoi reduce the survival and reproduction of copepod Calanus sinicus

(2015) Jia-Ning Lin et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Phytoplankton community structure in the river‑influenced continental margin of the northern Gulf of Mexico

(2015) S Chakraborty et al.   MARINE ECOLOGY PROGRESS SERIES

Meiofaunal community analysis by high-throughput sequencing: Comparison of extraction, quality filtering, and clustering methods

(2015) Pamela M. Brannock et al.   Marine Genomics

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Phytoplankton community structure in the river‑influenced continental margin of the northern Gulf of Mexico

(2015) S Chakraborty et al.   MARINE ECOLOGY PROGRESS SERIES

Interactions among members of the microbial loop in an estuary dominated by microzooplankton grazing

(2014) N Ortell et al.   AQUATIC MICROBIAL ECOLOGY

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Change and recovery of coastal mesozooplankton community structure during the Deepwater Horizon oil spill

(2014) L Carassou et al.   Environmental Research Letters

Picoeukaryotic diversity and distribution in the subtropical-tropical South China Sea

(2014) Wenxue Wu et al.   FEMS MICROBIOLOGY ECOLOGY

Small-scale temporal and spatial variations in protistan community composition at the San Pedro Ocean Time-series station off the coast of southern California

(2013) AAY Lie et al.   AQUATIC MICROBIAL ECOLOGY

Changes in free-living bacterial community diversity reflect the magnitude of environmental variability

(2013) Alice. C. Ortmann et al.   FEMS MICROBIOLOGY ECOLOGY

Monthly to interannual variability of microbial eukaryote assemblages at four depths in the eastern North Pacific

(2013) Diane Y Kim et al.   ISME Journal

A global perspective on marine photosynthetic picoeukaryote community structure

(2013) Amy R Kirkham et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Intra-Genomic Variation in the Ribosomal Repeats of Nematodes

(2013) Holly M. Bik et al.   PLoS One

A modeling study of water and salt exchange for a micro-tidal, stratified northern Gulf of Mexico estuary

(2012) Choong-Ki Kim et al.   JOURNAL OF MARINE SYSTEMS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Dramatic Shifts in Benthic Microbial Eukaryote Communities following the Deepwater Horizon Oil Spill

(2012) Holly M. Bik et al.   PLoS One

Marine Protistan Diversity

(2011) David A. Caron et al.   Annual Review of Marine Science

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

(2011) Virginia Edgcomb et al.   ISME Journal

Rapid Shifts in the Structure and Composition of a Protistan Assemblage During Bottle Incubations Affect Estimates of Total Protistan Species Richness

(2011) Diane Y. Kim et al.   MICROBIAL ECOLOGY

Depth matters: Microbial eukaryote diversity and community structure in the eastern North Pacific revealed through environmental gene libraries

(2010) Astrid Schnetzer et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Oil carbon entered the coastal planktonic food web during the Deepwater Horizon oil spill

(2010) William M Graham et al.   Environmental Research Letters

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Rapid shifts in dominant taxa among microbial eukaryotes in estuarine ecosystems

(2008) P Vigil et al.   AQUATIC MICROBIAL ECOLOGY

The life cycles of two coexisting copepods, Calanus chilensis and Centropages brachiatus, in the upwelling zone off northern Chile (23°S)

(2008) Pamela Hidalgo et al.   MARINE BIOLOGY

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics