Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism
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Title
Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism
Authors
Keywords
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Journal
Molecular BioSystems
Volume 12, Issue 5, Pages 1496-1506
Publisher
Royal Society of Chemistry (RSC)
Online
2016-03-21
DOI
10.1039/c5mb00827a
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Note: Only part of the references are listed.- New paradigms for metabolic modeling of human cells
- (2015) Adil Mardinoglu et al. CURRENT OPINION IN BIOTECHNOLOGY
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- (2014) R. Agren et al. Molecular Systems Biology
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- (2014) Nan Qin et al. NATURE
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- (2014) Francesco Gatto et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2014) Ming Liu et al. Protein & Cell
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- (2014) Saeed Shoaie et al. Frontiers in Genetics
- Genome-scale modeling of human metabolism - a systems biology approach
- (2013) Adil Mardinoglu et al. Biotechnology Journal
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- (2013) Q. Huang et al. CANCER RESEARCH
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- (2013) Diren Beyoğlu et al. JOURNAL OF HEPATOLOGY
- Current progress in development of hepatitis C virus vaccines
- (2013) T Jake Liang NATURE MEDICINE
- Understanding the hepatitis C virus life cycle paves the way for highly effective therapies
- (2013) Troels K H Scheel et al. NATURE MEDICINE
- Systems virology: host-directed approaches to viral pathogenesis and drug targeting
- (2013) G. Lynn Law et al. NATURE REVIEWS MICROBIOLOGY
- Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods
- (2013) Leif Väremo et al. NUCLEIC ACIDS RESEARCH
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- (2013) Mark P. Hamilton et al. Nature Communications
- The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum
- (2013) Rasmus Agren et al. PLoS Computational Biology
- Gene regulation is governed by a core network in hepatocellular carcinoma
- (2012) Zuguang Gu et al. BMC Systems Biology
- Systems biology methods help develop a better understanding of hepatitis C virus-induced liver injury
- (2012) Ragunath Singaravelu et al. HEPATOLOGY
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- (2012) Caroline Scholtes et al. HEPATOLOGY
- Power of metabolomics in diagnosis and biomarker discovery of hepatocellular carcinoma
- (2012) Xijun Wang et al. HEPATOLOGY
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- Lumican, an extracellular matrix proteoglycan, is a novel requisite for hepatic fibrosis
- (2012) Anuradha Krishnan et al. LABORATORY INVESTIGATION
- Hepatocellular carcinoma
- (2012) Alejandro Forner et al. LANCET
- Biomarkers for early diagnosis of hepatocellular carcinoma
- (2012) Alejandro Forner et al. LANCET ONCOLOGY
- Functions of DNA methylation: islands, start sites, gene bodies and beyond
- (2012) Peter A. Jones NATURE REVIEWS GENETICS
- NCBI GEO: archive for functional genomics data sets—update
- (2012) Tanya Barrett et al. NUCLEIC ACIDS RESEARCH
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- (2012) Yuichi Hirata et al. PLoS Pathogens
- Treatment failure and resistance with direct-acting antiviral drugs against hepatitis C virus
- (2011) Jean-Michel Pawlotsky HEPATOLOGY
- Systems medicine and metabolic modelling
- (2011) A. Mardinoglu et al. JOURNAL OF INTERNAL MEDICINE
- Systems Virology Identifies a Mitochondrial Fatty Acid Oxidation Enzyme, Dodecenoyl Coenzyme A Delta Isomerase, Required for Hepatitis C Virus Replication and Likely Pathogenesis
- (2011) A. L. Rasmussen et al. JOURNAL OF VIROLOGY
- Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery
- (2011) H. U. Kim et al. Molecular Systems Biology
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- (2011) Can Alkan et al. NATURE REVIEWS GENETICS
- The Role of MicroRNAs in Human Liver Cancers
- (2011) Chiara Braconi et al. SEMINARS IN ONCOLOGY
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- (2010) Andreas Merz et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Emerging roles of microRNA in the intracellular signaling networks of hepatocellular carcinoma
- (2010) Priscilla T-Y Law et al. JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY
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- (2010) Ines Thiele et al. Nature Protocols
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Constraints-based genome-scale metabolic simulation for systems metabolic engineering
- (2009) Jong Myoung Park et al. BIOTECHNOLOGY ADVANCES
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- Gene expression profiling in hepatocellular carcinoma: upregulation of genes in amplified chromosome regions
- (2008) Britta Skawran et al. MODERN PATHOLOGY
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