Protein intrinsic disorder within the Potyvirus genus: from proteome-wide analysis to functional annotation

Unstructural biology of the dengue virus proteins

(2015) Fanchi Meng et al.   FEBS Journal

Cotranslational Coat Protein-Mediated Inhibition of Potyviral RNA Translation

(2015) Jane Besong-Ndika et al.   JOURNAL OF VIROLOGY

14-3-3 Proteins in Plant-Pathogen Interactions

(2015) Rosa Lozano-Durán et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Structural Disorder in Viral Proteins

(2014) Bin Xue et al.   CHEMICAL REVIEWS

Classification of Intrinsically Disordered Regions and Proteins

(2014) Robin van der Lee et al.   CHEMICAL REVIEWS

Relocation of the NIb Gene in the Tobacco Etch Potyvirus Genome

(2014) E. Majer et al.   JOURNAL OF VIROLOGY

Tobacco etch virus Protein P1 Traffics to the Nucleolus and Associates with the Host 60S Ribosomal Subunits during Infection

(2014) F. Martinez et al.   JOURNAL OF VIROLOGY

The intrinsic disorder status of the human hepatitis C virus proteome

(2014) Xiao Fan et al.   Molecular BioSystems

The Potyviridae Cylindrical Inclusion Helicase: A Key Multipartner and Multifunctional Protein

(2014) M. Sorel et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Arabidopsis Protein Phosphatase DBP1 Nucleates a Protein Network with a Role in Regulating Plant Defense

(2014) José Luis Carrasco et al.   PLoS One

Intrinsic disorder mediates hepatitis C virus core-host cell protein interactions

(2014) Patrick T. Dolan et al.   PROTEIN SCIENCE

Use of Host-like Peptide Motifs in Viral Proteins Is a Prevalent Strategy in Host-Virus Interactions

(2014) Tzachi Hagai et al.   Cell Reports

Rapid Evolution of Virus Sequences in Intrinsically Disordered Protein Regions

(2014) Leonid Gitlin et al.   PLoS Pathogens

The Hypervariable Amino-Terminus of P1 Protease Modulates Potyviral Replication and Host Defense Responses

(2014) Fabio Pasin et al.   PLoS Pathogens

Crop immunity against viruses: outcomes and future challenges

(2014) Valérie Nicaise   Frontiers in Plant Science

Intracellular coordination of potyviral RNA functions in infection

(2014) Kristiina Mäkinen et al.   Frontiers in Plant Science

Under-folded proteins: Conformational ensembles and their roles in protein folding, function, and pathogenesis

(2013) Vladimir N. Uversky   BIOPOLYMERS

Intra-specific variability and biological relevance of P3N-PIPO protein length in potyviruses

(2013) Julia Hillung et al.   BMC EVOLUTIONARY BIOLOGY

A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome

(2013) Zhenling Peng et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Rapid Evolutionary Dynamics of Structural Disorder as a Potential Driving Force for Biological Divergence in Flaviviruses

(2013) Juan F. Ortiz et al.   Genome Biology and Evolution

Evolution of plant eukaryotic initiation factor 4E (eIF4E) and potyvirus genome-linked protein (VPg): A game of mirrors impacting resistance spectrum and durability

(2013) B. Moury et al.   INFECTION GENETICS AND EVOLUTION

Intrinsic Disorder in Proteins Involved in the Innate Antiviral Immunity: Another Flexible Side of a Molecular Arms Race

(2013) Bin Xue et al.   JOURNAL OF MOLECULAR BIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A short motif in the N-terminal part of the coat protein is a host-specific determinant of systemic infectivity for two potyviruses

(2013) Cecile Desbiez et al.   MOLECULAR PLANT PATHOLOGY

The eukaryotic linear motif resource ELM: 10 years and counting

(2013) Holger Dinkel et al.   NUCLEIC ACIDS RESEARCH

Marked Variability in the Extent of Protein Disorder within and between Viral Families

(2013) Ravindra Pushker et al.   PLoS One

Partially Disordered Structure in Intravirus Coat Protein of Potyvirus Potato Virus A

(2013) Alexander L. Ksenofontov et al.   PLoS One

Structure and Intrinsic Disorder in Protein Autoinhibition

(2013) Travis Trudeau et al.   STRUCTURE

Non-encapsidation activities of the capsid proteins of positive-strand RNA viruses

(2013) Peng Ni et al.   VIROLOGY

Novel ATPase activity of the polyprotein intermediate, Viral Protein genome-linked-Nuclear Inclusion-a protease, of Pepper vein banding potyvirus

(2012) Chhavi Mathur et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins

(2012) Fatemeh Miri Disfani et al.   BIOINFORMATICS

Order and disorder in viral proteins: new insights into an old paradigm

(2012) Carolina Alves et al.   Future Virology

Interactions via intrinsically disordered regions: What kind of motifs?

(2012) Rita Pancsa et al.   IUBMB LIFE

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life

(2012) Bin Xue et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

High-throughput characterization of intrinsic disorder in proteins from the Protein Structure Initiative

(2012) Derrick E. Johnson et al.   JOURNAL OF STRUCTURAL BIOLOGY

Virus variants with differences in the P1 protein coexist in a Plum pox virus population and display particular host-dependent pathogenicity features

(2012) VARVARA I. MALIOGKA et al.   MOLECULAR PLANT PATHOLOGY

Ubiquitin and Plant Viruses, Let's Play Together!

(2012) C. Alcaide-Loridan et al.   PLANT PHYSIOLOGY

Structural Disorder in Eukaryotes

(2012) Rita Pancsa et al.   PLoS One

An inhibitory function of WW domain-containing host proteins in RNA virus replication

(2012) Jun Qin et al.   VIROLOGY

Towards an integrated molecular model of plant–virus interactions

(2012) Santiago F Elena et al.   Current Opinion in Virology

Coat proteins, host factors and plant viral replication

(2012) Konstantin I Ivanov et al.   Current Opinion in Virology

Interaction of the Trans-Frame Potyvirus Protein P3N-PIPO with Host Protein PCaP1 Facilitates Potyvirus Movement

(2012) Paramasivan Vijayapalani et al.   PLoS Pathogens

Protein intrinsic disorder as a flexible armor and a weapon of HIV-1

(2011) Bin Xue et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Evolution and disorder

(2011) Celeste J Brown et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Protein disorder—a breakthrough invention of evolution?

(2011) Avner Schlessinger et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A viral deubiquitylating enzyme targets viral RNA-dependent RNA polymerase and affects viral infectivity

(2011) Mélanie Chenon et al.   EMBO JOURNAL

Structure of the Autocatalytic Cysteine Protease Domain of Potyvirus Helper-component Proteinase

(2011) Bihong Guo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A majority of the cancer/testis antigens are intrinsically disordered proteins

(2011) Krithika Rajagopalan et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

The helper component-proteinase of the Zucchini yellow mosaic virus inhibits the Hua Enhancer 1 methyltransferase activity in vitro

(2011) R. M. Jamous et al.   JOURNAL OF GENERAL VIROLOGY

The C terminus of lettuce mosaic potyvirus cylindrical inclusion helicase interacts with the viral VPg and with lettuce translation eukaryotic initiation factor 4E

(2011) G. Tavert-Roudet et al.   JOURNAL OF GENERAL VIROLOGY

Potyviral VPg Enhances Viral RNA Translation and Inhibits Reporter mRNA Translation In Planta

(2011) K. Eskelin et al.   JOURNAL OF VIROLOGY

Independent Effects of Alternative Splicing and Structural Constraint on the Evolution of Mammalian Coding Exons

(2011) F.-C. Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Roles of intrinsic disorder in protein–nucleic acid interactions

(2011) H. Jane Dyson   Molecular BioSystems

Attributes of short linear motifs

(2011) Norman E. Davey et al.   Molecular BioSystems

Top 10 plant viruses in molecular plant pathology

(2011) KAREN-BETH G. SCHOLTHOF et al.   MOLECULAR PLANT PATHOLOGY

ELM--the database of eukaryotic linear motifs

(2011) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Interaction between potyvirus P3 and ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) of host plants

(2011) Lin Lin et al.   VIRUS GENES

The genome-linked protein VPg of plant viruses—a protein with many partners

(2011) Jun Jiang et al.   Current Opinion in Virology

Proteome-wide evidence for enhanced positive Darwinian selection within intrinsically disordered regions in proteins

(2011) Johan Nilsson et al.   GENOME BIOLOGY

Bringing order to protein disorder through comparative genomics and genetic interactions

(2011) Jeremy Bellay et al.   GENOME BIOLOGY

Potyviruses and the Digital Revolution

(2010) Adrian Gibbs et al.   Annual Review of Phytopathology

A single amino acid mutation alters the capsid protein electrophoretic double-band phenotype of the Plum pox virus strain PPV-Rec

(2010) Z. W. Šubr et al.   ARCHIVES OF VIROLOGY

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

(2010) W. Delport et al.   BIOINFORMATICS

SF1 and SF2 helicases: family matters

(2010) Margaret E Fairman-Williams et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structural Flexibility Allows the Functional Diversity of Potyvirus Genome-Linked Protein VPg

(2010) K. I. Rantalainen et al.   JOURNAL OF VIROLOGY

Regions of intrinsic disorder help identify a novel nuclear localization signal in Toxoplasma gondii histone acetyltransferase TgGCN5-B

(2010) Stacy E. Dixon et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Pin1At Encoding a Peptidyl-Prolyl cis/trans Isomerase Regulates Flowering Time in Arabidopsis

(2010) Yu Wang et al.   MOLECULAR CELL

HSP70 and Its Cochaperone CPIP Promote Potyvirus Infection in Nicotiana benthamiana by Regulating Viral Coat Protein Functions

(2010) A. Hafren et al.   PLANT CELL

Structural determinants of tobacco vein mottling virus protease substrate specificity

(2010) Ping Sun et al.   PROTEIN SCIENCE

How viruses hijack cell regulation

(2010) Norman E. Davey et al.   TRENDS IN BIOCHEMICAL SCIENCES

Mutational analysis of the putative pipo of soybean mosaic virus suggests disruption of PIPO protein impedes movement

(2010) R.-H. Wen et al.   VIROLOGY

Revisiting Date and Party Hubs: Novel Approaches to Role Assignment in Protein Interaction Networks

(2010) Sumeet Agarwal et al.   PLoS Computational Biology

Formation of Complexes at Plasmodesmata for Potyvirus Intercellular Movement Is Mediated by the Viral Protein P3N-PIPO

(2010) Taiyun Wei et al.   PLoS Pathogens

Kinetic Advantage of Intrinsically Disordered Proteins in Coupled Folding–Binding Process: A Critical Assessment of the “Fly-Casting” Mechanism

(2009) Yongqi Huang et al.   JOURNAL OF MOLECULAR BIOLOGY

Overlapping Genes Produce Proteins with Unusual Sequence Properties and Offer Insight into De Novo Protein Creation

(2009) C. Rancurel et al.   JOURNAL OF VIROLOGY

Comparing Models of Evolution for Ordered and Disordered Proteins

(2009) C. J. Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolutionary conundrum of pathogen mimicry

(2009) Nels C. Elde et al.   NATURE REVIEWS MICROBIOLOGY

Control of Nuclear and Nucleolar Localization of Nuclear Inclusion Protein a of Picorna-Like Potato virus A in Nicotiana Species

(2009) M.-L. Rajamaki et al.   PLANT CELL

A Host RNA Helicase-Like Protein, AtRH8, Interacts with the Potyviral Genome-Linked Protein, VPg, Associates with the Virus Accumulation Complex, and Is Essential for Infection

(2009) T.-S. Huang et al.   PLANT PHYSIOLOGY

The Tobacco etch virus P3 protein forms mobile inclusions via the early secretory pathway and traffics along actin microfilaments

(2009) Xiaoyan Cui et al.   VIROLOGY

Protein intrinsic disorder and influenza virulence: the 1918 H1N1 and H5N1 viruses

(2009) Gerard Goh et al.   Virology Journal

Intrinsic disorder in Viral Proteins Genome-Linked: experimental and predictive analyses

(2009) Eugénie Hébrard et al.   Virology Journal

Prediction of Protein Binding Regions in Disordered Proteins

(2009) Bálint Mészáros et al.   PLoS Computational Biology

14-3-3 and FHA Domains Mediate Phosphoprotein Interactions

(2008) David Chevalier et al.   Annual Review of Plant Biology

Regulation of Cell Division by Intrinsically Unstructured Proteins: Intrinsic Flexibility, Modularity, and Signaling Conduits†

(2008) Charles A. Galea et al.   BIOCHEMISTRY

Turnip mosaic virus VPg interacts with Arabidopsis thaliana eIF(iso)4E and inhibits in vitro translation

(2008) Hiroshi Miyoshi et al.   BIOCHIMIE

Protein intrinsic disorder toolbox for comparative analysis of viral proteins

(2008) Gerard Goh et al.   BMC GENOMICS

Understanding eukaryotic linear motifs and their role in cell signaling and regulation

(2008) Francesca Diella   Frontiers in Bioscience-Landmark

Purification of viral genome-linked protein VPg from potato virus A-infected plants reveals several post-translationally modified forms of the protein

(2008) A. Hafren et al.   JOURNAL OF GENERAL VIROLOGY

Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants

(2008) R. Gabrenaite-Verkhovskaya et al.   JOURNAL OF GENERAL VIROLOGY

Structure of Flexible Filamentous Plant Viruses

(2008) A. Kendall et al.   JOURNAL OF VIROLOGY

Phosphoproteomic Analysis of the Mouse Brain Cytosol Reveals a Predominance of Protein Phosphorylation in Regions of Intrinsic Sequence Disorder

(2008) Mark O. Collins et al.   MOLECULAR & CELLULAR PROTEOMICS

Host-specific effect of P1 exchange between two potyviruses

(2008) BEATRIZ SALVADOR et al.   MOLECULAR PLANT PATHOLOGY

The role of disorder in interaction networks: a structural analysis

(2008) Philip M Kim et al.   Molecular Systems Biology

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS

PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery

(2008) M. Garcia-Boronat et al.   NUCLEIC ACIDS RESEARCH

Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg

(2008) Carine Charron et al.   PLANT JOURNAL

The Prehistory of Potyviruses: Their Initial Radiation Was during the Dawn of Agriculture

(2008) Adrian J. Gibbs et al.   PLoS One

An overlapping essential gene in the Potyviridae

(2008) B. Y.-W. Chung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Do viral proteins possess unique biophysical features?

(2008) Nobuhiko Tokuriki et al.   TRENDS IN BIOCHEMICAL SCIENCES

Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core

(2008) Kimmo I. Rantalainen et al.   VIROLOGY

Eukaryotic elongation factor 1A interacts with Turnip mosaic virus RNA-dependent RNA polymerase and VPg-Pro in virus-induced vesicles

(2008) Karine Thivierge et al.   VIROLOGY

Heat shock 70 protein interaction with Turnip mosaic virus RNA-dependent RNA polymerase within virus-induced membrane vesicles

(2008) Philippe J. Dufresne et al.   VIROLOGY