Mapping Phylogenetic Trees to Reveal Distinct Patterns of Evolution

Multilocus phylogenetic analyses of Hispaniolan and Bahamian trunk anoles (distichus species group)

(2015) Anthony J. Geneva et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An Ebola whole-virus vaccine is protective in nonhuman primates

(2015) A. Marzi et al.   SCIENCE

Fast Dating Using Least-Squares Criteria and Algorithms

(2015) Thu-Hien To et al.   SYSTEMATIC BIOLOGY

A Rapid Molecular Approach for Chromosomal Phasing

(2015) John F. Regan et al.   PLoS One

WinHAP2: an extremely fast haplotype phasing program for long genotype sequences

(2014) Weihua Pan et al.   BMC BIOINFORMATICS

Bayesian Inference of Infectious Disease Transmission from Whole-Genome Sequence Data

(2014) Xavier Didelot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Should genes with missing data be excluded from phylogenetic analyses?

(2014) Wei Jiang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

Practical Performance of Tree Comparison Metrics

(2014) Mary K. Kuhner et al.   SYSTEMATIC BIOLOGY

Phylodynamic Inference for Structured Epidemiological Models

(2014) David A. Rasmussen et al.   PLoS Computational Biology

Mojo Hand, a TALEN design tool for genome editing applications

(2013) Kevin L Neff et al.   BMC BIOINFORMATICS

Looking for trees in the forest: summary tree from posterior samples

(2013) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

Computational Tools for Evaluating Phylogenetic and Hierarchical Clustering Trees

(2012) John Chakerian et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating the Basic Reproductive Number from Viral Sequence Data

(2011) Tanja Stadler et al.   MOLECULAR BIOLOGY AND EVOLUTION

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Generation of biologically contained Ebola viruses

(2008) P. Halfmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA