Integrated Transcriptomics–Proteomics Analysis Identifies Molecular Phenotypic Alterations Associated with Colorectal Cancer

Proteomic Analysis of Low-Grade, Early-Stage Endometrial Carcinoma Reveals New Dysregulated Pathways Associated with Cell Death and Cell Signaling

(2021) Álvaro López-Janeiro et al.   Cancers

Revelation of Proteomic Indicators for Colorectal Cancer in Initial Stages of Development

(2020) Arthur T. Kopylov et al.   MOLECULES

Integration of Online Omics-Data Resources for Cancer Research

(2020) Tonmoy Das et al.   Frontiers in Genetics

The Extracellular Matrix Modulates the Metastatic Journey

(2019) FuiBoon Kai et al.   DEVELOPMENTAL CELL

Integrated transcriptomic and proteomic analysis of human eccrine sweat glands identifies missing and novel proteins

(2019) Chan Hyun Na et al.   MOLECULAR & CELLULAR PROTEOMICS

Plasma Inter-Alpha-Trypsin Inhibitor Heavy Chains H3 and H4 Serve as Novel Diagnostic Biomarkers in Human Colorectal Cancer

(2019) Xiao Jiang et al.   DISEASE MARKERS

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

(2019) David J. Clark et al.   CELL

Colorectal cancer

(2019) Evelien Dekker et al.   LANCET

Leucine-rich alpha-2-glycoprotein-1 is up-regulated in colorectal cancer and is a tumor promoter

(2018) Qian Zhang et al.   OncoTargets and Therapy

CA19-9 and Apolipoprotein-A2 isoforms as detection markers for pancreatic cancer - a prospective evaluation

(2018) K. Honda et al.   INTERNATIONAL JOURNAL OF CANCER

Extracellular matrix (ECM) stiffness and degradation as cancer drivers

(2018) Masoud Najafi et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences

(2016) Claudia Manzoni et al.   BRIEFINGS IN BIOINFORMATICS

Chemotherapeutic agents attenuate CXCL12-mediated migration of colon cancer cells by selecting for CXCR4-negative cells and increasing peptidase CD26

(2015) Murray J. Cutler et al.   BMC CANCER

Complement activation in Glioblastoma Multiforme pathophysiology: Evidence from serum levels and presence of complement activation products in tumor tissue

(2015) T.A.M. Bouwens et al.   JOURNAL OF NEUROIMMUNOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Review The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge

(2015) Katarzyna Tomczak et al.   Wspolczesna Onkologia-Contemporary Oncology

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

Intracellular sensing of complement C3 activates cell autonomous immunity

(2014) J. C. H. Tam et al.   SCIENCE

Oncogenes and the coagulation system – forces that modulate dormant and aggressive states in cancer

(2014) Nathalie Magnus et al.   THROMBOSIS RESEARCH

Autocrine Effects of Tumor-Derived Complement

(2014) Min Soon Cho et al.   Cell Reports

Candidate Serum Biomarkers for Early Intestinal Cancer Using 15N Metabolic Labeling and Quantitative Proteomics in the ApcMin/+ Mouse

(2013) Melanie M. Ivancic et al.   JOURNAL OF PROTEOME RESEARCH

Comparative proteomics, network analysis and post-translational modification identification reveal differential profiles of plasma Con A-bound glycoprotein biomarkers in gastric cancer

(2013) Yih-Huei Uen et al.   Journal of Proteomics

Secretomic Analysis Identifies Alpha-1 Antitrypsin (A1AT) as a Required Protein in Cancer Cell Migration, Invasion, and Pericellular Fibronectin Assembly for Facilitating Lung Colonization of Lung Adenocarcinoma Cells

(2012) Ying-Hua Chang et al.   MOLECULAR & CELLULAR PROTEOMICS

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Analysis of acute-phase proteins, AHSG, C3, CLI, HP and SAA, reveals distinctive expression patterns associated with breast, colorectal and lung cancer

(2011) Paul Dowling et al.   INTERNATIONAL JOURNAL OF CANCER

ITIH3 Is a Potential Biomarker for Early Detection of Gastric Cancer

(2010) Poh Kuan Chong et al.   JOURNAL OF PROTEOME RESEARCH

Leucine-rich alpha-2-glycoprotein-1 is upregulated in sera and tumors of ovarian cancer patients

(2010) John D Andersen et al.   Journal of Ovarian Research

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Frequent expression loss of Inter-alpha-trypsin inhibitor heavy chain (ITIH) genes in multiple human solid tumors: A systematic expression analysis

(2008) Alexander Hamm et al.   BMC CANCER