A Recent Whole-Genome Duplication Divides Populations of a Globally Distributed Microsporidian

Transcriptomic profiling of host-parasite interactions in the microsporidian Trachipleistophora hominis

(2015) Andrew K. Watson et al.   BMC GENOMICS

Genome analyses suggest the presence of polyploidy and recent human-driven expansions in eight global populations of the honeybee pathogenNosema ceranae

(2015) Adrian Pelin et al.   ENVIRONMENTAL MICROBIOLOGY

Contrasting host–pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes

(2015) Christopher A. Desjardins et al.   Nature Communications

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

(2014) Shengyi Liu et al.   Nature Communications

Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation

(2013) Guoqing Pan et al.   BMC GENOMICS

Complete Genome Sequences from Three Genetically Distinct Strains Reveal High Intraspecies Genetic Diversity in the Microsporidian Encephalitozoon cuniculi

(2013) Jean-François Pombert et al.   EUKARYOTIC CELL

Microsporidian Encephalomyelitis in Cultured Yellowtail Seriola quinqueradiata

(2013) Hiroshi Yokoyama et al.   FISH PATHOLOGY

Reduction and Expansion in Microsporidian Genome Evolution: New Insights from Comparative Genomics

(2013) Sirintra Nakjang et al.   Genome Biology and Evolution

PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment

(2013) Nicolas Lartillot et al.   SYSTEMATIC BIOLOGY

Microsporidia: diverse, dynamic, and emergent pathogens in aquatic systems

(2013) Grant D. Stentiford et al.   TRENDS IN PARASITOLOGY

The Genome of Spraguea lophii and the Basis of Host-Microsporidian Interactions

(2013) Scott E. Campbell et al.   PLoS Genetics

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth

(2012) C. A. Cuomo et al.   GENOME RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Single-nucleotide polymorphisms of two closely related microsporidian parasites suggest a clonal population expansion after the last glaciation

(2012) Karen L. Haag et al.   MOLECULAR ECOLOGY

Proto-genes and de novo gene birth

(2012) Anne-Ruxandra Carvunis et al.   NATURE

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Spraguea lophii (Microsporidia) parasite of the teleost fish, Lophius piscatorius from Tunisian coasts: Evidence for an extensive chromosome length polymorphism

(2012) Lamjed Mansour et al.   PARASITOLOGY INTERNATIONAL

Redefining the genus Spraguea based on ultrastructural and phylogenetic data from Spraguea gastrophysus n. sp. (Phylum Microsporidia), a parasite found in Lophius gastrophysus (Teleostei) from Brazil

(2012) Graça Casal et al.   PARASITOLOGY RESEARCH

The Genome of the Obligate Intracellular Parasite Trachipleistophora hominis: New Insights into Microsporidian Genome Dynamics and Reductive Evolution

(2012) Eva Heinz et al.   PLoS Pathogens

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Microsporidiosis

(2011) Elizabeth S. Didier et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Spraguea (Microsporida: Spraguidae) infections in the nervous system of the Japanese anglerfish, Lophius litulon (Jordan), with comments on transmission routes and host pathology

(2011) M A Freeman et al.   JOURNAL OF FISH DISEASES

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species

(2010) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

Rate, molecular spectrum, and consequences of human mutation

(2010) M. Lynch   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis

(2010) Nicolas Corradi et al.   Nature Communications

Evidence of Selection upon Genomic GC-Content in Bacteria

(2010) Falk Hildebrand et al.   PLoS Genetics

Evidence That Mutation Is Universally Biased towards AT in Bacteria

(2010) Ruth Hershberg et al.   PLoS Genetics

Phenotypic connections in surprising places

(2010) Bolan Linghu et al.   GENOME BIOLOGY

Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation

(2009) Eric Peyretaillade et al.   BMC GENOMICS

Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

(2009) Patrick P. Edger et al.   CHROMOSOME RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Genomic Analyses of the Microsporidian Nosema ceranae, an Emergent Pathogen of Honey Bees

(2009) R. Scott Cornman et al.   PLoS Pathogens

A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi

(2008) Anastasios D. Tsaousis et al.   NATURE

A genome-wide view of the spectrum of spontaneous mutations in yeast

(2008) M. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Testing Congruence in Phylogenomic Analysis

(2008) Jessica W. Leigh et al.   SYSTEMATIC BIOLOGY

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources