Dynamic Evolution of Nitric Oxide Detoxifying Flavohemoglobins, a Family of Single-Protein Metabolic Modules in Bacteria and Eukaryotes

Efficient engineering of marker-free synthetic allotetraploids of Saccharomyces

(2016) William G. Alexander et al.   FUNGAL GENETICS AND BIOLOGY

Type I flavohemoglobin of mycobacterium smegmatis is a functional nitric oxide dioxygenase

(2014) Naveen Thakur et al.   IUBMB LIFE

A Draft Genome of the Honey Bee Trypanosomatid Parasite Crithidia mellificae

(2014) Charles Runckel et al.   PLoS One

The Skin Microbiome: A Focus on Pathogens and Their Association with Skin Disease

(2014) Keisha Findley et al.   PLoS Pathogens

Antibacterial gene transfer across the tree of life

(2014) Jason A Metcalf et al.   eLife

Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions

(2013) Ai Muto et al.   Journal of Chemical Information and Modeling

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

(2012) Maureen Stolzer et al.   BIOINFORMATICS

Protection from nitrosative stress: A central role for microbial flavohemoglobin

(2012) Michael T. Forrester et al.   FREE RADICAL BIOLOGY AND MEDICINE

An Unconventional Hexacoordinated Flavohemoglobin fromMycobacterium tuberculosis

(2012) Sanjay Gupta et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Recurrent Horizontal Transfer of Bacterial Toxin Genes to Eukaryotes

(2012) Y. Moran et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Phylogenetic Analysis of the Globins in Fungi

(2012) David Hoogewijs et al.   PLoS One

Novel flavohemoglobins of mycobacteria

(2011) Sanjay Gupta et al.   IUBMB LIFE

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Flavohemoglobin and nitric oxide detoxification in the human protozoan parasite Giardia intestinalis

(2010) Daniela Mastronicola et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Giardia lamblia encodes a functional flavohemoglobin

(2010) Steven Rafferty et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Functional analysis and subcellular location of two flavohemoglobins from Aspergillus oryzae

(2010) Shengmin Zhou et al.   FUNGAL GENETICS AND BIOLOGY

The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer

(2010) O. Cohen et al.   MOLECULAR BIOLOGY AND EVOLUTION

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

(2010) Etienne G. J. Danchin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Transfer and Diversification of Microbial Eukaryotes

(2009) Jan O. Andersson   Annual Review of Microbiology

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Massive Horizontal Gene Transfer in Bdelloid Rotifers

(2008) E. A. Gladyshev et al.   SCIENCE