Cross-Study Comparison Reveals Common Genomic, Network, and Functional Signatures of Desiccation Resistance inDrosophila melanogaster

Serotonin and insulin-like peptides modulate leucokinin-producing neurons that affect feeding and water homeostasis inDrosophila

(2015) Yiting Liu et al.   JOURNAL OF COMPARATIVE NEUROLOGY

The impact of library preparation protocols on the consistency of allele frequency estimates in Pool-Seq data

(2015) Robert Kofler et al.   Molecular Ecology Resources

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

(2015) Anthony Long et al.   NATURE REVIEWS GENETICS

Insect capa neuropeptides impact desiccation and cold tolerance

(2015) Selim Terhzaz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-Species Regulatory Network Analysis Identifies a Synergistic Interaction between FOXM1 and CENPF that Drives Prostate Cancer Malignancy

(2014) Alvaro Aytes et al.   CANCER CELL

Population-Genetic Inference from Pooled-Sequencing Data

(2014) Michael Lynch et al.   Genome Biology and Evolution

Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation

(2014) C Schlötterer et al.   HEREDITY

Standing Genetic Variation Drives Repeatable Experimental Evolution in Outcrossing Populations of Saccharomyces cerevisiae

(2014) Molly K. Burke et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nuclear architecture as an epigenetic regulator of neural development and function

(2014) J.M. Alexander et al.   NEUROSCIENCE

Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape

(2014) Y. Ichihashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Single Gene Affects Both Ecological Divergence and Mate Choice in Drosophila

(2014) H. Chung et al.   SCIENCE

Genome-wide analysis in Drosophila reveals age-specific effects of SNPs on fitness traits

(2014) Mary F. Durham et al.   Nature Communications

Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

(2014) Alan O. Bergland et al.   PLoS Genetics

Promises and limitations of hitchhiking mapping

(2013) Sergey V Nuzhdin et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Network analysis of GWAS data

(2013) Mark DM Leiserson et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Signaling by Drosophila capa neuropeptides

(2013) Shireen-A. Davies et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Transcriptomic analysis of inbreeding depression in cold-sensitiveDrosophila melanogastershows upregulation of the immune response

(2013) C. J. Vermeulen et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Cell signalling mechanisms for insect stress tolerance

(2013) S. A. Davies et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Assessing the relative importance of environmental effects, carry-over effects and species differences in thermal stress resistance: a comparison of Drosophilids across field and laboratory generations

(2013) M. Schiffer et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

(2013) Ray Tobler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations ofDrosophila melanogaster

(2013) Martin Kapun et al.   MOLECULAR ECOLOGY

Functional genomic and phenotypic responses to desiccation in natural populations of a desert drosophilid

(2013) Subhash Rajpurohit et al.   MOLECULAR ECOLOGY

Systems genetics approaches to understand complex traits

(2013) Mete Civelek et al.   NATURE REVIEWS GENETICS

FlyBase 102—advanced approaches to interrogating FlyBase

(2013) Susan E. St. Pierre et al.   NUCLEIC ACIDS RESEARCH

The D. melanogaster capa-1 neuropeptide activates renal NF-kB signaling

(2013) Selim Terhzaz et al.   PEPTIDES

A Genome-Wide, Fine-Scale Map of Natural Pigmentation Variation in Drosophila melanogaster

(2013) Héloïse Bastide et al.   PLoS Genetics

Trehalose as an indicator of desiccation stress in Drosophila melanogaster larvae: A potential marker of anhydrobiosis

(2012) Leena J. Thorat et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies

(2012) R. Kofler et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Investigating Natural Variation in Drosophila Courtship Song by the Evolve and Resequence Approach

(2012) T. L. Turner et al.   GENETICS

Immune and stress response ‘cross-talk’ in the Drosophila Malpighian tubule

(2012) Shireen-Anne Davies et al.   JOURNAL OF INSECT PHYSIOLOGY

Drosophila TRP channels and animal behavior

(2012) Melissa A. Fowler et al.   LIFE SCIENCES

Genome-wide patterns of latitudinal differentiation among populations ofDrosophila melanogasterfrom North America

(2012) Daniel K. Fabian et al.   MOLECULAR ECOLOGY

Adaptation ofDrosophilato a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles

(2012) PABLO OROZCO-terWENGEL et al.   MOLECULAR ECOLOGY

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Trait-based approaches to conservation physiology: forecasting environmental change risks from the bottom up

(2012) S. L. Chown   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mechanism and Function of Drosophila capa GPCR: A Desiccation Stress-Responsive Receptor with Functional Homology to Human NeuromedinU Receptor

(2012) Selim Terhzaz et al.   PLoS One

Drosophila Nociceptors Mediate Larval Aversion to Dry Surface Environments Utilizing Both the Painless TRP Channel and the DEG/ENaC Subunit, PPK1

(2012) Wayne A. Johnson et al.   PLoS One

Genome-Wide Association Analysis of Oxidative Stress Resistance in Drosophila melanogaster

(2012) Allison L. Weber et al.   PLoS One

Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster

(2012) Yuan Zhu et al.   PLoS One

Epistasis dominates the genetic architecture of Drosophila quantitative traits

(2012) W. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An insect-specific P450 oxidative decarbonylase for cuticular hydrocarbon biosynthesis

(2012) Y. Qiu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climatic Predictors of Temperature Performance Curve Parameters in Ectotherms Imply Complex Responses to Climate Change

(2011) Susana Clusella-Trullas et al.   AMERICAN NATURALIST

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Gene set analysis of genome-wide association studies: Methodological issues and perspectives

(2011) Lily Wang et al.   GENOMICS

Water loss in insects: An environmental change perspective

(2011) Steven L. Chown et al.   JOURNAL OF INSECT PHYSIOLOGY

High Resolution Mapping of Candidate Alleles for Desiccation Resistance in Drosophila melanogaster under Selection

(2011) Marina Telonis-Scott et al.   MOLECULAR BIOLOGY AND EVOLUTION

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Controlling gene expression in response to stress

(2011) Eulàlia de Nadal et al.   NATURE REVIEWS GENETICS

Candidate Genes Detected in Transcriptome Studies Are Strongly Dependent on Genetic Background

(2011) Pernille Sarup et al.   PLoS One

Insulin Production and Signaling in Renal Tubules of Drosophila Is under Control of Tachykinin-Related Peptide and Regulates Stress Resistance

(2011) Jeannette A. E. Söderberg et al.   PLoS One

Ruffus: a lightweight Python library for computational pipelines

(2010) Leo Goodstadt   BIOINFORMATICS

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

Quantitative genetic analysis suggests causal association between cuticular hydrocarbon composition and desiccation survival in Drosophila melanogaster

(2010) B R Foley et al.   HEREDITY

Identification of a Gene,Desiccate, Contributing to Desiccation Resistance inDrosophila melanogaster

(2010) Takeshi Kawano et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Analysing biological pathways in genome-wide association studies

(2010) Kai Wang et al.   NATURE REVIEWS GENETICS

DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila

(2010) Thilakam Murali et al.   NUCLEIC ACIDS RESEARCH

Metabolic Stress Responses in Drosophila Are Modulated by Brain Neurosecretory Cells That Produce Multiple Neuropeptides

(2010) Lily Kahsai et al.   PLoS One

Tolerance adaptation and precipitation changes complicate latitudinal patterns of climate change impacts

(2010) Timothy C. Bonebrake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Transcriptional Regulation of Metabolism Associated With the Increased Desiccation Resistance of the Cactophilic Drosophila mojavensis

(2009) Luciano M. Matzkin et al.   GENETICS

Seasonal Changes in the Long-Distance Linkage Disequilibrium in Drosophila melanogaster

(2009) M. Itoh et al.   JOURNAL OF HEREDITY

System-wide molecular evidence for phenotypic buffering in Arabidopsis

(2009) Jingyuan Fu et al.   NATURE GENETICS

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Fundamental Evolutionary Limits in Ecological Traits Drive Drosophila Species Distributions

(2009) V. Kellermann et al.   SCIENCE

The Insulin-Regulated CREB Coactivator TORC Promotes Stress Resistance in Drosophila

(2008) Biao Wang et al.   Cell Metabolism

Genetics of gene expression and its effect on disease

(2008) Valur Emilsson et al.   NATURE