NEXMD v2.0 Software Package for Nonadiabatic Excited State Molecular Dynamics Simulations
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Title
NEXMD v2.0 Software Package for Nonadiabatic Excited State Molecular Dynamics Simulations
Authors
Keywords
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Journal
Journal of Chemical Theory and Computation
Volume 19, Issue 16, Pages 5356-5368
Publisher
American Chemical Society (ACS)
Online
2023-07-29
DOI
10.1021/acs.jctc.3c00583
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- (2019) Eugene G. Maksimov et al. Scientific Reports
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- An ab initio multiple cloning approach for the simulation of photoinduced dynamics in conjugated molecules
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- COBRAMM 2.0 — A software interface for tailoring molecular electronic structure calculations and running nanoscale (QM/MM) simulations
- (2018) Oliver Weingart et al. JOURNAL OF MOLECULAR MODELING
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- (2018) Dianelys Ondarse-Alvarez et al. Journal of Physical Chemistry Letters
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- (2017) Ricardo Franklin-Mergarejo et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
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- The PYXAID Program for Non-Adiabatic Molecular Dynamics in Condensed Matter Systems
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- Newton-X: a surface-hopping program for nonadiabatic molecular dynamics
- (2013) Mario Barbatti et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
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- (2013) Filipp Furche et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
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