DeepMPSF: A Deep Learning Network for Predicting General Protein Phosphorylation Sites Based on Multiple Protein Sequence Features

GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins

(2023) Miaomiao Chen et al.   NUCLEIC ACIDS RESEARCH

Current status of PTMs structural databases: applications, limitations and prospects

(2022) Alexandre G. de Brevern et al.   AMINO ACIDS

Acetylation in the regulation of autophagy

(2022) Yinfeng Xu et al.   Autophagy

The Role of Post-Translational Modifications on the Structure and Function of Tau Protein

(2022) Haiqiong Ye et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

SIK2 promotes ovarian cancer cell motility and metastasis by phosphorylating MYLK

(2022) Xiu Shi et al.   Molecular Oncology

Ageing – Oxidative stress, PTMs and disease

(2022) Thomas Ebert et al.   MOLECULAR ASPECTS OF MEDICINE

cMyBPC phosphorylation modulates the effect of omecamtiv mecarbil on myocardial force generation

(2021) Ranganath Mamidi et al.   JOURNAL OF GENERAL PHYSIOLOGY

PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein–protein interaction information

(2021) Hangyuan Yang et al.   BIOINFORMATICS

Phosphorylation of CAP1 regulates lung cancer proliferation, migration, and invasion

(2021) Jie Zeng et al.   JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY

GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins

(2020) Chenwei Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

DeepPSP: A Global–Local Information-Based Deep Neural Network for the Prediction of Protein Phosphorylation Sites

(2020) Lei Guo et al.   JOURNAL OF PROTEOME RESEARCH

Oxidative phosphorylation as a potential therapeutic target for cancer therapy

(2019) Valentina Sica et al.   INTERNATIONAL JOURNAL OF CANCER

Boosting phosphorylation site prediction with sequence feature‐based machine learning

(2019) Shyantani Maiti et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes

(2019) Shaofeng Lin et al.   BRIEFINGS IN BIOINFORMATICS

Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome

(2018) Fuyi Li et al.   BIOINFORMATICS

DeepPhos: prediction of protein phosphorylation sites with deep learning

(2018) Fenglin Luo et al.   BIOINFORMATICS

Capsule network for protein post-translational modification site prediction

(2018) Duolin Wang et al.   BIOINFORMATICS

PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection

(2017) Jiangning Song et al.   Scientific Reports

Proteogenomics connects somatic mutations to signalling in breast cancer

(2016) Philipp Mertins et al.   NATURE

MCRIP1, an ERK Substrate, Mediates ERK-Induced Gene Silencing during Epithelial-Mesenchymal Transition by Regulating the Co-Repressor CtBP

(2015) Kenji Ichikawa et al.   MOLECULAR CELL

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

(2015) Babak Alipanahi et al.   NATURE BIOTECHNOLOGY

PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine

(2014) Yongchao Dou et al.   AMINO ACIDS

Activities at the Universal Protein Resource (UniProt)

(2013)   NUCLEIC ACIDS RESEARCH

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications

(2012) Cheng-Tsung Lu et al.   NUCLEIC ACIDS RESEARCH

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

(2011) P. V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship

(2010) Inkyung Jung et al.   BMC BIOINFORMATICS

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS