A pan-cancer landscape of pathogenic somatic copy number variations

An overview of mutational and copy number signatures in human cancer

(2022) Christopher D Steele et al.   JOURNAL OF PATHOLOGY

Copy number alterations in stage I epithelial ovarian cancer highlight three genomic patterns associated with prognosis

(2022) Chiara Pesenti et al.   EUROPEAN JOURNAL OF CANCER

A pan-cancer compendium of chromosomal instability

(2022) Ruben M. Drews et al.   NATURE

Signatures of copy number alterations in human cancer

(2022) Christopher D. Steele et al.   NATURE

Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes

(2022) Teng Gao et al.   NATURE BIOTECHNOLOGY

Molecular profiling identifies distinct subtypes across TP53 mutant tumors

(2022) Xin Chen et al.   JCI Insight

X-CNV: genome-wide prediction of the pathogenicity of copy number variations

(2021) Li Zhang et al.   Genome Medicine

Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas

(2021) Luuk Harbers et al.   Frontiers in Oncology

Whole genome copy number analyses reveal a highly aberrant genome in TP53 mutant lung adenocarcinoma tumors

(2021) Maria Moksnes Bjaanæs et al.   BMC CANCER

Allele-specific genomic data elucidate the role of somatic gain and copy-number neutral loss of heterozygosity in cancer

(2021) Yari Ciani et al.   Cell Systems

High levels of chromosomal copy number alterations and TP53 mutations correlate with poor outcome in younger breast cancer patients

(2020) Ayla Koçak et al.   AMERICAN JOURNAL OF PATHOLOGY

Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs

(2020) Kevin Hadi et al.   CELL

Unique genomic features and prognostic value of COSMIC mutational signature 4 in lung adenocarcinoma and lung squamous cell carcinoma

(2020) Xiuyu Cai et al.   Annals of Translational Medicine

Benchmark and integration of resources for the estimation of human transcription factor activities

(2019) Luz Garcia-Alonso et al.   GENOME RESEARCH

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

(2018) Jianfang Liu et al.   CELL

Comprehensive Characterization of Cancer Driver Genes and Mutations

(2018) Matthew H. Bailey et al.   CELL

Oncogenic Signaling Pathways in The Cancer Genome Atlas

(2018) Francisco Sanchez-Vega et al.   CELL

Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

(2018) Katherine A. Hoadley et al.   CELL

Tumor copy number alteration burden is a pan-cancer prognostic factor associated with recurrence and death

(2018) Haley Hieronymus et al.   eLife

COSMIC: the Catalogue Of Somatic Mutations In Cancer

(2018) John G Tate et al.   NUCLEIC ACIDS RESEARCH

DGIdb 3.0: a redesign and expansion of the drug–gene interaction database

(2017) Kelsy C Cotto et al.   NUCLEIC ACIDS RESEARCH

ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization

(2016) Guangchuang Yu et al.   Molecular BioSystems

Global diversity, population stratification, and selection of human copy-number variation

(2015) Peter H. Sudmant et al.   SCIENCE

Pan-cancer patterns of somatic copy number alteration

(2013) Travis I Zack et al.   NATURE GENETICS

Identification of somatic mutations in non-small cell lung carcinomas using whole-exome sequencing

(2012) Pengyuan Liu et al.   CARCINOGENESIS

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.

(2012) Ethan Cerami et al.   Cancer Discovery

TP53 alterations in acute myeloid leukemia with complex karyotype correlate with specific copy number alterations, monosomal karyotype, and dismal outcome

(2011) F. G. Rucker et al.   BLOOD

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

Mechanisms of change in gene copy number

(2009) P. J. Hastings et al.   NATURE REVIEWS GENETICS

Copy number variations and cancer

(2009) Adam Shlien et al.   Genome Medicine