How to cross the desert if you are small and need mountains? Out‐of‐Ethiopia dispersal in Afromontane shrews

Spatial phylogenetics

(2023) Brent D. Mishler   JOURNAL OF BIOGEOGRAPHY

Cryptic diversity of Crocidura shrews in the savannahs of Eastern and Southern Africa

(2023) Malahat Dianat et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Complex reticulate evolution of speckled brush‐furred rats ( Lophuromys ) in the Ethiopian centre of endemism

(2021) Valeria A. Komarova et al.   MOLECULAR ECOLOGY

Molecular systematics and biogeographic history of the African climbing-mouse complex (Dendromus)

(2021) G. Voelker et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The taxonomic impediment: a shortage of taxonomists, not the lack of technical approaches

(2021) Michael S Engel et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Biogeography of Angolan rodents: The first glimpse based on phylogenetic evidence

(2021) Jarmila Krásová et al.   DIVERSITY AND DISTRIBUTIONS

Snapshot isolation and isolation history challenge the analogy between mountains and islands used to understand endemism

(2020) Suzette G. A. Flantua et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Tectonics, climate and the diversification of the tropical African terrestrial flora and fauna

(2020) Thomas L.P. Couvreur et al.   BIOLOGICAL REVIEWS

ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy

(2020) Chao Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mapping Africa’s biodiversity: More of the same is just not good enough

(2020) Harith Farooq et al.   SYSTEMATIC BIOLOGY

Annotated checklist, taxonomy and distribution of rodents in Ethiopia

(2019) Josef Bryja et al.   FOLIA ZOOLOGICA

Museums and cradles of diversity are geographically coincident for narrowly distributed Neotropical snakes

(2019) Josué A. R. Azevedo et al.   ECOGRAPHY

RASP 4: ancestral state reconstruction tool for multiple genes and characters

(2019) Yan Yu et al.   MOLECULAR BIOLOGY AND EVOLUTION

ipyrad: Interactive assembly and analysis of RADseq datasets

(2019) Deren A R Eaton et al.   BIOINFORMATICS

Reticulate Pleistocene evolution of Ethiopian rodent genus along remarkable altitudinal gradient

(2018) Josef Bryja et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Ethiopian highlands as a cradle of the African fossorial root-rats (genus Tachyoryctes ), the genetic evidence

(2018) Radim Šumbera et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fossils know it best: using a new set of fossil calibrations to improve the temporal phylogenetic framework of murid rodents (Rodentia: Muridae)

(2018) Tatiana Aghová et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Phylogeography, mitochondrial DNA diversity, and demographic history of geladas (Theropithecus gelada)

(2018) Dietmar Zinner et al.   PLoS One

ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes

(2018) Benoit Morel et al.   BIOINFORMATICS

Evolution of the Grey-bellied pygmy mouse group: Highly structured molecular diversity with predictable geographic ranges but morphological crypsis

(2018) Jarmila Krásová et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

The role of climatic and geological events in generating diversity in Ethiopian grass frogs (genus Ptychadena )

(2017) Megan L. Smith et al.   Royal Society Open Science

New status for two African giant forest shrews,Crocidura goliath goliathandC. goliath nimbasilvanus(Mammalia: Soricomorpha), based on molecular and geometic morphometric analyses

(2017) F. Jacquet et al.   AFRICAN ZOOLOGY

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Evolutionary history of the thicket rats (genus Grammomys ) mirrors the evolution of African forests since late Miocene

(2016) Josef Bryja et al.   JOURNAL OF BIOGEOGRAPHY

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

(2016) Erfan Sayyari et al.   MOLECULAR BIOLOGY AND EVOLUTION

Colonization and diversification in the African ‘sky islands’: insights from fossil-calibrated molecular dating ofLychnis(Caryophyllaceae)

(2016) Abel Gizaw et al.   NEW PHYTOLOGIST

Diversity of shrews in Ethiopia, with the description of two new species of Crocidura (Mammalia: Lipotyphla: Soricidae)

(2016) LEONID A. LAVRENCHENKO et al.   ZOOTAXA

AMAS: a fast tool for alignment manipulation and computing of summary statistics

(2016) Marek L. Borowiec   PeerJ

Phylogeny, phylogeography and geographical variation in theCrocidura monax(Soricidae) species complex from the montane islands of Tanzania, with descriptions of three new species

(2015) William T. Stanley et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles

(2015) Terrence C. Demos et al.   PLoS One

Molecular and morphological evidence for a Pleistocene radiation of laminate-toothed rats (Otomys: Rodentia) across a volcanic archipelago in equatorial Africa

(2014) Peter J. Taylor et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeography of the heathers Erica arborea and E. trimera in the afro-alpine ‘sky islands’ inferred from AFLPs and plastid DNA sequences

(2013) Abel Gizaw et al.   FLORA

The role of dispersal and vicariance in the Pleistocene history of an East African mountain rodent,Praomys delectorum

(2013) Josef Bryja et al.   JOURNAL OF BIOGEOGRAPHY

Uncovering cryptic diversity and refugial persistence among small mammal lineages across the Eastern Afromontane biodiversity hotspot

(2013) Terrence C. Demos et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Hiding in the highlands: Evolution of a frog species complex of the genus Ptychadena in the Ethiopian highlands

(2013) Xenia Freilich et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Out of Arabia: A Complex Biogeographic History of Multiple Vicariance and Dispersal Events in the Gecko Genus Hemidactylus (Reptilia: Gekkonidae)

(2013) Jiří Šmíd et al.   PLoS One

Hominin evolution in settings of strong environmental variability

(2013) Richard Potts   QUATERNARY SCIENCE REVIEWS

Bayesian Analysis of Biogeography when the Number of Areas is Large

(2013) Michael J. Landis et al.   SYSTEMATIC BIOLOGY

Glacial cycles as an allopatric speciation pump in north-eastern American freshwater fishes

(2012) Julien April et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Testing of alternative hypotheses for speciation: A case study on ground vertebrates in tropical mountains

(2011) L. A. Lavrenchenko   BIOLOGY BULLETIN

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes

(2008) Sylvain Dubey et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Trends, rhythms and events in Plio-Pleistocene African climate

(2008) Martin H. Trauth et al.   QUATERNARY SCIENCE REVIEWS

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY