Assessment of Bacterial Communities and Predictive Functional Profiling in Soils Subjected to Short-Term Fumigation-Incubation

Modeling the effects of temperature and pH on the resistance of Alicyclobacillus acidoterrestris in conventional heat-treated fruit beverages through a meta-analysis approach

(2015) Leonardo P. Silva et al.   FOOD MICROBIOLOGY

Bacillus asahii comes to the fore in organic manure fertilized alkaline soils

(2015) Youzhi Feng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Dynamics of extracellular DNA decomposition and bacterial community composition in soil

(2015) Ember M. Morrissey et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of soil microeukaryotic communities to short-term fumigation-incubation revealed by MiSeq amplicon sequencing

(2015) Lin Chen et al.   Frontiers in Microbiology

Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed

(2014) Jennifer D Rocca et al.   ISME Journal

Bacterial community structure in fumigated soil

(2014) Cristina A. Domínguez-Mendoza et al.   SOIL BIOLOGY & BIOCHEMISTRY

Molecular and functional characterization of bacteria isolated from straw and goat manure based vermicompost

(2013) Jayakumar Pathma et al.   APPLIED SOIL ECOLOGY

A novel lignin degradation bacterial consortium for efficient pulping

(2013) Yanxia Wang et al.   BIORESOURCE TECHNOLOGY

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

(2013) Sangita Ganesh et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Active microorganisms in soil: Critical review of estimation criteria and approaches

(2013) Evgenia Blagodatskaya et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil organic matter turnover is governed by accessibility not recalcitrance

(2012) Jennifer A. J. Dungait et al.   GLOBAL CHANGE BIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Soil enzymes in a changing environment: Current knowledge and future directions

(2012) Richard G. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Isolation and characterization of novel bacterial strains exhibiting ligninolytic potential

(2011) Luaine Bandounas et al.   BMC BIOTECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Clostridial spore germination versus bacilli: Genome mining and current insights

(2010) Yinghua Xiao et al.   FOOD MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Role of the gerP Operon in Germination and Outgrowth of Bacillus anthracis Spores

(2010) Katherine A. Carr et al.   PLoS One

Germination of spores of Bacillales and Clostridiales species: mechanisms and proteins involved

(2010) Daniel Paredes-Sabja et al.   TRENDS IN MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Global patterns in belowground communities

(2009) Noah Fierer et al.   ECOLOGY LETTERS

Influence of the hot-fill water-spray-cooling process after continuous pasteurization on the number of decimal reductions and on Alicyclobacillus acidoterrestris CRA 7152 growth in orange juice stored at 35°C

(2009) Ana Cláudia N.F. Spinelli et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reply to Kuzyakov et al.’s comments on our paper: ‘Kemmitt, S. Lanyon, C. V., Waite, I.S., Wen, Q., O'Donnell, A.G., Brookes, P.C., 2008. Mineralization of native soil organic matter is not regulated by the size, activity or composition of the soil microbial biomass – a new perspective. Soil Biology and Biochemistry 40, 61–73’

(2008) P.C. Brookes et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comments on the paper by Kemmitt et al. (2008) ‘Mineralization of native soil organic matter is not regulated by the size, activity or composition of the soil microbial biomass – A new perspective’ [Soil Biology & Biochemistry 40, 61–73]: The biology of the Regulatory Gate

(2008) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Dynamics of litter carbon turnover and microbial abundance in a rye detritusphere

(2007) Christian Poll et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mineralization of native soil organic matter is not regulated by the size, activity or composition of the soil microbial biomass—a new perspective

(2007) S.J. Kemmitt et al.   SOIL BIOLOGY & BIOCHEMISTRY