Pulsed 13C2-Acetate Protein-SIP Unveils Epsilonproteobacteria as Dominant Acetate Utilizers in a Sulfate-Reducing Microbial Community Mineralizing Benzene

Metagenome-Based Metabolic Reconstruction Reveals the Ecophysiological Function of Epsilonproteobacteria in a Hydrocarbon-Contaminated Sulfidic Aquifer

(2015) Andreas H. Keller et al.   Frontiers in Microbiology

MetaProSIP: Automated Inference of Stable Isotope Incorporation Rates in Proteins for Functional Metaproteomics

(2014) Timo Sachsenberg et al.   JOURNAL OF PROTEOME RESEARCH

Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria

(2014) Dragana Bozinovski et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Anaerobic Benzene Oxidation via Phenol in Geobacter metallireducens

(2013) Tian Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium

(2012) Martin Taubert et al.   ISME Journal

Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community

(2012) Kim M Handley et al.   ISME Journal

A cross-platform toolkit for mass spectrometry and proteomics

(2012) Matthew C Chambers et al.   NATURE BIOTECHNOLOGY

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

(2012) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

Effects of hydrogen and acetate on benzene mineralisation under sulphate-reducing conditions

(2011) Jana Rakoczy et al.   FEMS MICROBIOLOGY ECOLOGY

Sulfur Metabolisms in Epsilon- and Gamma-Proteobacteria in Deep-Sea Hydrothermal Fields

(2011) Masahiro Yamamoto et al.   Frontiers in Microbiology

Community Structure of Subsurface Biofilms in the Thermal Sulfidic Caves of Acquasanta Terme, Italy

(2010) D. S. Jones et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments

(2009) Dirk Benndorf et al.   BIODEGRADATION

Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing

(2009) Steffi Herrmann et al.   ENVIRONMENTAL MICROBIOLOGY

Enrichment of anaerobic benzene-degrading microorganisms by in situ microcosms

(2009) Steffi Herrmann et al.   FEMS MICROBIOLOGY ECOLOGY

Carbon and hydrogen isotope fractionation of benzene during biodegradation under sulfate-reducing conditions: a laboratory to field site approach

(2009) Anko Fischer et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Diversity of Uncultured Epsilonproteobacteria from Terrestrial Sulfidic Caves and Springs

(2008) M. L. Porter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

OpenMS – An open-source software framework for mass spectrometry

(2008) Marc Sturm et al.   BMC BIOINFORMATICS

Identification of intermediates formed during anaerobic benzene degradation by an iron-reducing enrichment culture

(2008) Umakanth Kunapuli et al.   ENVIRONMENTAL MICROBIOLOGY

Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance

(2008) Satoshi Nakagawa et al.   FEMS MICROBIOLOGY ECOLOGY

Molecular characterization of bacterial communities mineralizing benzene under sulfate-reducing conditions

(2008) Sabine Kleinsteuber et al.   FEMS MICROBIOLOGY ECOLOGY

Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)

(2008) Nico Jehmlich et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY