Transcriptomic analysis revealed the dynamic response mechanism to acute ammonia exposure in the ivory shell, Babylonia areolata

Comprehensive analysis of immune parameters, mRNA and miRNA profiles, and immune genes expression in the gill of rainbow trout infected with infectious hematopoietic necrosis virus (IHNV)

(2023) Lu Zhao et al.   FISH & SHELLFISH IMMUNOLOGY

Metabolic and transcriptional responses demonstrating enhanced thermal tolerance in domesticated abalone

(2023) Feng Yu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

First transcriptome profiling in gill and hepatopancrease tissues of Metapenaeus ensis in response to acute ammonia-N stress

(2023) Yun-Dong Li et al.   FISH & SHELLFISH IMMUNOLOGY

An overview of the mechanisms underlying hypoxia tolerance differences in aquatic animals and their inspirations for aquaculture

(2023) Yawei Shen et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Cardiac performance and heart gene network provide dynamic responses of bay scallop Argopecten irradians irradians exposure to marine heatwaves

(2023) Xinghai Zhu et al.   Science of The Total Environment

Dietary Taurine Intake Affects the Growth Performance, Lipid Composition, and Antioxidant Defense of Juvenile Ivory Shell (Babylonia areolata)

(2023) Yunchao Sun et al.   Animals

Effects of Ammonia and Salinity Stress on Non-Volatile and Volatile Compounds of Ivory Shell (Babylonia areolata)

(2023) Chunsheng Liu et al.   Foods

Transcriptome, antioxidant enzymes and histological analysis reveal molecular mechanisms responsive to long-term cold stress in silver pomfret (Pampus argenteus)

(2022) Man Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Long-Term Ammonia Toxicity in the Hepatopancreas of Swimming Crab Portunus trituberculatus: Cellular Stress Response and Tissue Damage

(2022) Yunliang Lu et al.   Frontiers in Marine Science

Lipid metabolism, immune and apoptosis transcriptomic responses of the hepatopancreas of Chinese mitten crab to the exposure to microcystin-LR

(2022) Cheng Chi et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Effects of long-term exposure to ammonia on growth performance, immune response, and body biochemical composition of juvenile ivory shell, Babylonia areolata

(2022) Jiancong Zhou et al.   AQUACULTURE

Integrated biochemical, transcriptomic and metabolomic analyses provide insight into heat stress response in Yangtze sturgeon (Acipenser dabryanus)

(2022) Yeyu Chen et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Divergent Carry-Over Effects of Hypoxia during the Early Development of Abalone

(2022) Yawei Shen et al.   Environmental Science & Technology

Transitions, challenges and trends in China's abalone culture industry

(2022) Xiaolong Gao et al.   Reviews in Aquaculture

Effects of salinity on growth performance, physiological response, and body biochemical composition of juvenile ivory shell (Babylonia areolata)

(2022) Chunsheng Liu et al.   AQUACULTURE

A genome-wide association study of heat tolerance in Pacific abalone based on genome resequencing

(2021) Feng Yu et al.   AQUACULTURE

Transcriptome analysis of liver elucidates key immune-related pathways in Nile tilapia Oreochromis niloticus following infection with tilapia lake virus

(2021) Neeraj Sood et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptomics Analysis and Re-sequencing Reveal the Mechanism Underlying the Thermotolerance of an Artificial Selection Population of the Pacific Oyster

(2021) Yulong Tan et al.   Frontiers in Physiology

Lethal temperature and toxicity of ammonia in juveniles of Curimbatá (Prochilodus lineatus)

(2021) Tais Inês Zuffo et al.   AQUACULTURE

Genomic and transcriptomic identification of the cathepsin superfamily in the Mediterranean mussel Mytilus galloprovincialis

(2021) Alejandro Romero et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Distinct metabolic shifts occur during the transition between normoxia and hypoxia in the hybrid and its maternal abalone

(2021) Yawei Shen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effects of acute ammonia toxicity on oxidative stress, DNA damage and apoptosis in digestive gland and gill of Asian clam (Corbicula fluminea)

(2020) Tianxu Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Tspan18 is a novel regulator of thrombo-inflammation

(2020) Rebecca L. Gavin et al.   MEDICAL MICROBIOLOGY AND IMMUNOLOGY

Effects of ammonia on shrimp physiology and immunity: a review

(2020) Mingming Zhao et al.   Reviews in Aquaculture

Different Transcriptomic Responses to Thermal Stress in Heat-Tolerant and Heat-Sensitive Pacific Abalones Indicated by Cardiac Performance

(2019) Nan Chen et al.   Frontiers in Physiology

De novo transcriptome assembly and gene expression profile of thermally challenged green abalone (Haliotis fulgens: Gastropoda) under acute hypoxia and hypercapnia

(2019) Miguel A. Tripp-Valdez et al.   Marine Genomics

Growth performance, physiological response and histology changes of juvenile blunt snout bream, Megalobrama amblycephala exposed to chronic ammonia

(2019) Wuxiao Zhang et al.   AQUACULTURE

Cadmium-induced oxidative stress, histopathology, and transcriptome changes in the hepatopancreas of freshwater crayfish (Procambarus clarkii)

(2019) Yu Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Exposure to acute ammonia stress influences survival, immune response and antioxidant status of pacific white shrimp (Litopenaeus vannamei) pretreated with diverse levels of inositol

(2019) Shijun Chen et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis of response mechanism to ammonia stress in Asian clam (Corbicula fluminea)

(2019) Tianxu Zhang et al.   AQUATIC TOXICOLOGY

Ammonia toxicity in the mud crab (Scylla paramamosain): The mechanistic insight from physiology to transcriptome analysis

(2019) Chang-Hong Cheng et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Transcriptome analysis of oriental river Prawn(Macrobrachium nipponense)Hepatopancreas in response to ammonia exposure

(2019) Jielun Yu et al.   FISH & SHELLFISH IMMUNOLOGY

Clinical significance and function of RDH16 as a tumor‐suppressing gene in hepatocellular carcinoma

(2019) Ying‐Hui Zhu et al.   HEPATOLOGY RESEARCH

Adaptations to the mudflat: Insights from physiological and transcriptional responses to thermal stress in a burrowing bivalve Sinonovacula constricta

(2019) Wen-yi Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Proteomics Studies on the three Larval Stages of Development and Metamorphosis of Babylonia areolata

(2018) Minghui Shen et al.   Scientific Reports

Transcriptome reveals involvement of immune defense, oxidative imbalance, and apoptosis in ammonia-stress response of the black tiger shrimp (Penaeus monodon)

(2018) Yundong Li et al.   FISH & SHELLFISH IMMUNOLOGY

Divergence and plasticity shape adaptive potential of the Pacific oyster

(2018) Li Li et al.   Nature Ecology & Evolution

Transcriptomic analysis of liver from grass carp ( Ctenopharyngodon idellus ) exposed to high environmental ammonia reveals the activation of antioxidant and apoptosis pathways

(2017) Jiali Jin et al.   FISH & SHELLFISH IMMUNOLOGY

Oxidative stress regulates mitogen-activated protein kinases and c-Jun activation involved in heat stress and lipopolysaccharide-induced intestinal epithelial cell apoptosis

(2017) Yanan Liu et al.   Molecular Medicine Reports

Comparative assessment of the genetic variation in selectively bred generations from two geographic populations of ivory shell (Babylonia areolata )

(2016) Jingqiang Fu et al.   AQUACULTURE RESEARCH

Combined effects of temperature, salinity and rearing density on growth and survival of juvenile ivory shell, Babylonia areolata (Link 1807) population in Thailand

(2016) Wengang Lü et al.   AQUACULTURE RESEARCH

Seawater acidification affects the physiological energetics and spawning capacity of the Manila clam Ruditapes philippinarum during gonadal maturation

(2016) Xian Xu et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Ammonia exposure induces oxidative stress, endoplasmic reticulum stress and apoptosis in hepatopancreas of pacific white shrimp (Litopenaeus vannamei)

(2016) Zhongxiu Liang et al.   FISH & SHELLFISH IMMUNOLOGY

The protective effects of taurine on acute ammonia toxicity in grass carp Ctenopharynodon idellus

(2016) Xiaodan Xing et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome Analysis of the Hepatopancreas in the Pacific White Shrimp (Litopenaeus vannamei) under Acute Ammonia Stress

(2016) Xia Lu et al.   PLoS One

Effects of ammonia exposure on apoptosis, oxidative stress and immune response in pufferfish (Takifugu obscurus)

(2015) Chang-Hong Cheng et al.   AQUATIC TOXICOLOGY

Protective effect of shrimp carotenoids against ammonia stress in common carp, Cyprinus carpio

(2014) Sowmya Rama et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Effects of fructooligosaccharide on immune response, antioxidant capability and HSP70 and HSP90 expressions of blunt snout bream (Megalobrama amblycephala) under high ammonia stress

(2014) Chun-Nuan Zhang et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Anti-Oxidative Defences Are Modulated Differentially in Three Freshwater Teleosts in Response to Ammonia-Induced Oxidative Stress

(2014) Amit Kumar Sinha et al.   PLoS One

Influence of temperature in thermal and oxidative stress responses in estuarine fish

(2013) D. Madeira et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

De novo whole transcriptome analysis of the fish louse, Argulus siamensis: First molecular insights into characterization of Toll downstream signalling molecules of crustaceans

(2013) Pramoda Kumar Sahoo et al.   EXPERIMENTAL PARASITOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Immune responses and expression of immune-related genes in swimming crab Portunus trituberculatus exposed to elevated ambient ammonia-N stress

(2010) Feng Yue et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Environmental toxicity, oxidative stress and apoptosis: Ménage à Trois

(2008) Rodrigo Franco et al.   MUTATION RESEARCH-GENETIC TOXICOLOGY AND ENVIRONMENTAL MUTAGENESIS

Apoptosis: controlled demolition at the cellular level

(2007) Rebecca C. Taylor et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY