Loss of function of ribosomal protein L13a blocks blastocyst formation and reveals a potential nuclear role in gene expression

Ribosomal proteins regulate 2-cell-stage transcriptome in mouse embryonic stem cells

(2023) Yao Yi et al.   Stem Cell Reports

Redox signaling by glutathione peroxidase 2 links vascular modulation to metabolic plasticity of breast cancer

(2022) Zuen Ren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N

(2021) Yun Zhang et al.   GENOME RESEARCH

High‐fat diet‐induced GAIT element‐mediated translational silencing of mRNAs encoding inflammatory proteins in macrophage protects against atherosclerosis

(2020) Abhijit Basu et al.   FASEB JOURNAL

PFKFB2 regulates glycolysis and proliferation in pancreatic cancer cells

(2020) Selahattin C. Ozcan et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Cell Adhesion Molecule 1 Contributes to Cell Survival in Crowded Epithelial Monolayers

(2020) Man Hagiyama et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RNA sequencing reveals that Prx II gene knockout can down-regulate the allograft rejection of dermal mesenchymal stem cells

(2020) Ying-Hao Han et al.   Applied Biological Chemistry

GPX2 silencing relieves epithelial–mesenchymal transition, invasion, and metastasis in pancreatic cancer by downregulating Wnt pathway

(2019) Fuzhou Li et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Structure of the human activated spliceosome in three conformational states

(2018) Xiaofeng Zhang et al.   CELL RESEARCH

GAITing the GUT

(2018) Barsanjit Mazumder   Cellular & Molecular Immunology

RAB39A: a Rab small GTPase with a prominent role in cancer stemness

(2018) Tokuhiro Chano et al.   JOURNAL OF BIOCHEMISTRY

Potential role of CBX7 in regulating pluripotency of adult human pluripotent-like olfactory stem cells in stroke model

(2018) Jia-Rong Fan et al.   Cell Death & Disease

Yolk sac macrophage progenitors traffic to the embryo during defined stages of development

(2018) C. Stremmel et al.   Nature Communications

Downregulation of ribosome biogenesis during early forebrain development

(2018) Kevin F Chau et al.   eLife

Interactome mapping defines BRG1, a component of the SWI/SNF chromatin remodeling complex, as a new partner of the transcriptional regulator CTCF

(2018) Maria Michela Marino et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Conserved structures formed by heterogeneous RNA sequences drive silencing of an inflammation responsive post-transcriptional operon

(2017) Abhijit Basu et al.   NUCLEIC ACIDS RESEARCH

Embryo implantation evolved from an ancestral inflammatory attachment reaction

(2017) Oliver W. Griffith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pervasive translational regulation of the cell signalling circuitry underlies mammalian development

(2017) Kotaro Fujii et al.   Nature Communications

CBX7 negatively regulates migration and invasion in glioma via Wnt/β-catenin pathway inactivation

(2017) Zhongyuan Bao et al.   Oncotarget

Protein Expression Landscape of Mouse Embryos during Pre-implantation Development

(2017) Yawei Gao et al.   Cell Reports

Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation

(2016) Carlos G. Sanchez et al.   Cell Stem Cell

Rpl13a small nucleolar RNAs regulate systemic glucose metabolism

(2016) Jiyeon Lee et al.   JOURNAL OF CLINICAL INVESTIGATION

Towards Functional Annotation of the Preimplantation Transcriptome: An RNAi Screen in Mammalian Embryos

(2016) Wei Cui et al.   Scientific Reports

Cytokines and Blastocyst Hatching

(2015) Polani B. Seshagiri et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

L13a-dependent translational control in macrophages limits the pathogenesis of colitis

(2015) Darshana Poddar et al.   Cellular & Molecular Immunology

BRG1 GovernsNanogTranscription in Early Mouse Embryos and Embryonic Stem Cells via Antagonism of Histone H3 Lysine 9/14 Acetylation

(2015) Timothy S. Carey et al.   MOLECULAR AND CELLULAR BIOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Ribosomal proteins: functions beyond the ribosome

(2015) Xiang Zhou et al.   Journal of Molecular Cell Biology

Partial Loss of Rpl11 in Adult Mice Recapitulates Diamond-Blackfan Anemia and Promotes Lymphomagenesis

(2015) Lucia Morgado-Palacin et al.   Cell Reports

Ribosomal Protein L13a Deficiency in Macrophages Promotes Atherosclerosis by Limiting Translation Control-Dependent Retardation of Inflammation

(2014) Abhijit Basu et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

(2014) Hongshan Jiang et al.   BMC BIOINFORMATICS

Ribosomal Proteins and Human Diseases: Pathogenesis, Molecular Mechanisms, and Therapeutic Implications

(2014) Wei Wang et al.   MEDICINAL RESEARCH REVIEWS

RPLP1, a Crucial Ribosomal Protein for Embryonic Development of the Nervous System

(2014) Laura Perucho et al.   PLoS One

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

GSVA: gene set variation analysis for microarray and RNA-Seq data

(2013) Sonja Hänzelmann et al.   BMC BIOINFORMATICS

An Extraribosomal Function of Ribosomal Protein L13a in Macrophages Resolves Inflammation

(2013) D. Poddar et al.   JOURNAL OF IMMUNOLOGY

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

(2013) Zhigang Xue et al.   NATURE

“Transflammation”: When Innate Immunity Meets Induced Pluripotency

(2012) Luke A.J. O’Neill   CELL

Activation of Innate Immunity Is Required for Efficient Nuclear Reprogramming

(2012) Jieun Lee et al.   CELL

Transcription factor AP-2  is a core regulator of tight junction biogenesis and cavity formation during mouse early embryogenesis

(2012) I. Choi et al.   DEVELOPMENT

Identification of four genes required for mammalian blastocyst formation

(2012) Marc Maserati et al.   ZYGOTE

Translational Control by the Eukaryotic Ribosome

(2011) Ivan Topisirovic et al.   CELL

Ribosome-Mediated Specificity in Hox mRNA Translation and Vertebrate Tissue Patterning

(2011) Nadya Kondrashov et al.   CELL

Small Nucleolar RNAs U32a, U33, and U35a Are Critical Mediators of Metabolic Stress

(2011) Carlos I. Michel et al.   Cell Metabolism

Ribosomopathies: human disorders of ribosome dysfunction

(2010) A. Narla et al.   BLOOD

REVIEW ARTICLE: Inflammation and Implantation

(2009) Nava Dekel et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Identification of Zinc-finger BED Domain-containing 3 (Zbed3) as a Novel Axin-interacting Protein That Activates Wnt/β-Catenin Signaling

(2009) Ting Chen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

How Common Are Extraribosomal Functions of Ribosomal Proteins?

(2009) Jonathan R. Warner et al.   MOLECULAR CELL

Genome-Wide Polysome Profiling Reveals an Inflammation-Responsive Posttranscriptional Operon in Gamma Interferon-Activated Monocytes

(2008) K. Vyas et al.   MOLECULAR AND CELLULAR BIOLOGY

SWI/SNF-Brg1 Regulates Self-Renewal and Occupies Core Pluripotency-Related Genes in Embryonic Stem Cells

(2008) Benjamin L. Kidder et al.   STEM CELLS