Complex interactions between diverse mobile genetic elements drive the evolution of metal‐resistant bacterial genomes

Examining horizontal gene transfer in microbial communities

(2021) Ilana Lauren Brito   NATURE REVIEWS MICROBIOLOGY

Bioremediation of toxic heavy metals (THMs) contaminated sites: concepts, applications and challenges

(2020) Zeeshanur Rahman et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Effects of soil heavy metal pollution on microbial activities and community diversity in different land use types in mining areas

(2020) Xingqing Zhao et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Long-lasting effect of mercury contamination on the soil microbiota and its co-selection of antibiotic resistance

(2020) Khandaker Rayhan Mahbub et al.   ENVIRONMENTAL POLLUTION

Cadmium enhances conjugative plasmid transfer to a fresh water microbial community

(2020) Qiang Pu et al.   ENVIRONMENTAL POLLUTION

Are the existing guideline values adequate to protect soil health from inorganic mercury contamination?

(2018) Khandaker Rayhan Mahbub et al.   ENVIRONMENT INTERNATIONAL

Sub-inhibitory concentrations of heavy metals facilitate the horizontal transfer of plasmid-mediated antibiotic resistance genes in water environment

(2018) Ye Zhang et al.   ENVIRONMENTAL POLLUTION

Acidic leaching of potentially toxic metals cadmium, cobalt, chromium, copper, nickel, lead, and zinc from two Zn smelting slag materials incubated in an acidic soil

(2018) Taoze Liu et al.   ENVIRONMENTAL POLLUTION

Mobile Genetic Elements Associated with Antimicrobial Resistance

(2018) Sally R. Partridge et al.   CLINICAL MICROBIOLOGY REVIEWS

Genomic Islands Confer Heavy Metal Resistance in Mucilaginibacter kameinonensis and Mucilaginibacter rubeus Isolated from a Gold/Copper Mine

(2018) Yuan Li et al.   Genes

Mercury remediation potential of a mercury resistant strain Sphingopyxis sp. SE2 isolated from contaminated soil

(2017) Khandaker Rayhan Mahbub et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Cobalt and nickel impair DNA metabolism by the oxidative stress independent pathway

(2017) Vineet Kumar et al.   Metallomics

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

Comparative genomic analysis of 26 Sphingomonas and Sphingobium strains: Dissemination of bioremediation capabilities, biodegradation potential and horizontal gene transfer

(2017) Qiang Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Lateral gene transfer, bacterial genome evolution, and the Anthropocene

(2016) Michael R. Gillings   Annals of the New York Academy of Sciences

Bioremediation potential of a highly mercury resistant bacterial strain Sphingobium SA2 isolated from contaminated soil

(2016) Khandaker Rayhan Mahbub et al.   CHEMOSPHERE

A review of toxicity and mechanisms of individual and mixtures of heavy metals in the environment

(2016) Xiangyang Wu et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community

(2016) Christopher L. Hemme et al.   mBio

Characterization of Cu(II) and Cd(II) resistance mechanisms in Sphingobium sp. PHE-SPH and Ochrobactrum sp. PHE-OCH and their potential application in the bioremediation of heavy metal-phenanthrene co-contaminated sites

(2015) Chen Chen et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Insights from 20 years of bacterial genome sequencing

(2015) Miriam Land et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Horizontal gene transfer: building the web of life

(2015) Shannon M. Soucy et al.   NATURE REVIEWS GENETICS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Complete sequencing of Novosphingobium sp. PP1Y reveals a biotechnologically meaningful metabolic pattern

(2014) Valeria D’Argenio et al.   BMC GENOMICS

Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways

(2014) Helianthous Verma et al.   BMC GENOMICS

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

Isolation and characterization of a toxic metal-tolerant Phenanthrene-degrader Sphingobium sp. in a two-liquid-phase partitioning bioreactor (TPPB)

(2013) Congying Wang et al.   Environmental Earth Sciences

Sphingobium sp. FB3 degrades a mixture of polycyclic aromatic hydrocarbons

(2013) Bo Fu et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

Phylogeny and organization of recombinase in trio (RIT) elements

(2013) N. Ricker et al.   PLASMID

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Heavy metal toxicity to bacteria – Are the existing growth media accurate enough to determine heavy metal toxicity?

(2012) I.V.N. Rathnayake et al.   CHEMOSPHERE

Sphingobium cupriresistens sp. nov., a copper-resistant bacterium isolated from copper mine soil, and emended description of the genus Sphingobium

(2012) L. Li et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Biogeochemical C and N cycles in urban soils

(2008) K LORENZ et al.   ENVIRONMENT INTERNATIONAL

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants

(2008) Lisa C Crossman et al.   GENOME BIOLOGY