Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits

Gene losses in the common vampire bat illuminate molecular adaptations to blood feeding

(2022) Moritz Blumer et al.   Science Advances

Pattern of New Gene Origination in a Special Fish Lineage, the Flatfishes

(2021) Haorong Li et al.   Genes

Trophic innovations fuel reef fish diversification

(2020) Alexandre C. Siqueira et al.   Nature Communications

Whole genome-wide chromosome fusion and new gene birth in the Monopterus albus genome

(2020) Yibin Cheng et al.   Cell and Bioscience

The sequence and de novo assembly of Oxygymnocypris stewartii genome

(2019) Hai-Ping Liu et al.   Scientific Data

Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly

(2019) Ou Wang et al.   GENOME RESEARCH

The Evolution of Color Pattern in Butterflyfishes (Chaetodontidae)

(2019) Michael E Alfaro et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

(2019) Yingyao Zhou et al.   Nature Communications

The identification of genes involved in the evolution of color patterns in fish

(2019) Uwe Irion et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Teleost Fish-Specific Preferential Retention of Pigmentation Gene-Containing Families After Whole Genome Duplications in Vertebrates

(2018) Thibault Lorin et al.   G3-Genes Genomes Genetics

Draft genome of the Peruvian scallop Argopecten purpuratus

(2018) Chao Li et al.   GigaScience

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

Highly Continuous Genome Assembly of Eurasian Perch (Perca fluviatilis) Using Linked-Read Sequencing

(2018) Mikhail Yu. Ozerov et al.   G3-Genes Genomes Genetics

Reef fish functional traits evolve fastest at trophic extremes

(2018) Samuel R. Borstein et al.   Nature Ecology & Evolution

Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

(2018) Milan Malinsky et al.   Nature Ecology & Evolution

Direct determination of diploid genome sequences

(2017) Neil I. Weisenfeld et al.   GENOME RESEARCH

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data

(2017) Yuxin Chen et al.   GigaScience

The evolution of fishes and corals on reefs: form, function and interdependence

(2016) David R. Bellwood et al.   BIOLOGICAL REVIEWS

Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus ): current status and its characteristics

(2016) Joseph D. DiBattista et al.   Molecular Ecology Resources

Draft genome of the Chinese mitten crab, Eriocheir sinensis

(2016) Linsheng Song et al.   GigaScience

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

(2016) Neva C. Durand et al.   Cell Systems

Calcium phosphate mineralization is widely applied in crustacean mandibles

(2016) Shmuel Bentov et al.   Scientific Reports

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

TreeFam v9: a new website, more species and orthology-on-the-fly

(2013) Fabian Schreiber et al.   NUCLEIC ACIDS RESEARCH

Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system

(2013) Li-En Jao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Terrestrial chemical cues help coral reef fish larvae locate settlement habitat surrounding islands

(2011) Danielle L. Dixson et al.   Ecology and Evolution

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Pigmentation Pathway Evolution after Whole-Genome Duplication in Fish

(2009) Ingo Braasch et al.   Genome Biology and Evolution

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes

(2009) D. R. BELLWOOD et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Diversity and functional importance of coral-feeding fishes on tropical coral reefs

(2008) Andrew J. Cole et al.   FISH AND FISHERIES