Bacterial acid stress response: from cellular changes to antibiotic tolerance and phenotypic heterogeneity

Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states

(2023) Peijun Ma et al.   CELL

Probiotics in Functional Foods: Survival Assessment and Approaches for Improved Viability

(2022) Jeyanthi Palanivelu et al.   Applied Sciences-Basel

Nocturnal Acidification: A Coordinating Cue in the Euprymna scolopes–Vibrio fischeri Symbiosis

(2022) Brian L. Pipes et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Dynamic gene expression and growth underlie cell-to-cell heterogeneity in Escherichia coli stress response

(2022) Nadia M. V. Sampaio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of the Streptococcus mutans Proteome during Acid and Oxidative Stress Reveals Modules of Protein Coexpression and an Expanded Role for the TreR Transcriptional Regulator

(2022) Elizabeth L. Tinder et al.   mSystems

Division of labor and collective functionality in Escherichia coli under acid stress

(2022) Sophie Brameyer et al.   Communications Biology

Bacterial battle against acidity

(2022) Julia Schwarz et al.   FEMS MICROBIOLOGY REVIEWS

Mycobacterial Response to Acidic Environment: Protective Mechanisms

(2022) Rupal Rai et al.   Pathogens and Disease

Bacterial Stress Responses as Potential Targets in Overcoming Antibiotic Resistance

(2022) Jirapat Dawan et al.   Microorganisms

Proteomic Profiling and Stress Response in Pediococcus acidilactici under Acetic Acid

(2022) Menghan Zhang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Serine Deamination Is a New Acid Tolerance Mechanism Observed in Uropathogenic Escherichia coli

(2022) Michelle A. Wiebe et al.   mBio

Heterogeneity and Evolutionary Tunability of Escherichia coli Resistance against Extreme Acid Stress

(2022) Stefanie Van Riet et al.   Microbiology Spectrum

Altered Metabolic Strategies: Elaborate Mechanisms Adopted by Oenococcus oeni in Response to Acid Stress

(2021) Yiman Qi et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Whole genome and acid stress comparative transcriptome analysis of Lactiplantibacillus plantarum ZDY2013

(2021) Lingling Peng et al.   ARCHIVES OF MICROBIOLOGY

The adaptation mechanisms of Acidithiobacillus caldus CCTCC M 2018054 to extreme acid stress: Bioleaching performance, physiology, and transcriptomics

(2021) Shoushuai Feng et al.   ENVIRONMENTAL RESEARCH

Genome-Wide Identification of Genes Involved in Acid Stress Resistance of Salmonella Derby

(2021) Dan Gu et al.   Genes

Extreme Acid Modulates Fitness Trade-Offs of Multidrug Efflux Pumps MdtEF-TolC and AcrAB-TolC in Escherichia coli K-12

(2021) Samantha H. Schaffner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identifying small ORFs in prokaryotes with ribosome profiling

(2021) Nora Vazquez-Laslop et al.   JOURNAL OF BACTERIOLOGY

Persister Escherichia coli Cells Have a Lower Intracellular pH than Susceptible Cells but Maintain Their pH in Response to Antibiotic Treatment

(2021) Olivia Goode et al.   mBio

Comparative Genome-Wide Transcriptome Analysis of Brucella suis and Brucella microti Under Acid Stress at pH 4.5: Cold Shock Protein CspA and Dps Are Associated With Acid Resistance of B. microti

(2021) Jorge A. de la Garza-García et al.   Frontiers in Microbiology

Molecular Characterization of an Intrinsically Disordered Chaperone Reveals Net-Charge Regulation in Chaperone Action

(2021) Chang Ren et al.   JOURNAL OF MOLECULAR BIOLOGY

Transcriptome Sequencing of Listeria monocytogenes Reveals Major Gene Expression Changes in Response to Lactic Acid Stress Exposure but a Less Pronounced Response to Oxidative Stress

(2020) Bienvenido W. Cortes et al.   Frontiers in Microbiology

Molecular design of a signaling system influences noise in protein abundance under acid stress in different γ-Proteobacteria

(2020) Sophie Brameyer et al.   JOURNAL OF BACTERIOLOGY

Transcriptome Analysis of the Acid Stress Response of Desulfovibrio vulgaris ATCC 7757

(2020) Hang Yu et al.   CURRENT MICROBIOLOGY

Acidification of Cytoplasm in Escherichia coli Provides a Strategy to Cope with Stress and Facilitates Development of Antibiotic Resistance

(2020) Esmeralda Z. Reyes-Fernández et al.   Scientific Reports

The Evolutionary Conservation of Escherichia coli Drug Efflux Pumps Supports Physiological Functions

(2020) Tanisha Teelucksingh et al.   JOURNAL OF BACTERIOLOGY

Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria

(2020) Fabian Imdahl et al.   Nature Microbiology

Mapping the Transcriptional and Fitness Landscapes of a Pathogenic E. coli Strain: The Effects of Organic Acid Stress under Aerobic and Anaerobic Conditions

(2020) Francesca Bushell et al.   Genes

Temporal order and precision of complex stress responses in individual bacteria

(2019) Karin Mitosch et al.   Molecular Systems Biology

Phenotypic Heterogeneity Generated by Histidine Kinase-Based Signaling Networks

(2019) Kirsten Jung et al.   JOURNAL OF MOLECULAR BIOLOGY

Single cell, super-resolution imaging reveals an acid pH-dependent conformational switch in SsrB regulates SPI-2

(2019) Andrew Tze Fui Liew et al.   eLife

Microbial response to acid stress: mechanisms and applications

(2019) Ningzi Guan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The mechanism of bidirectional pH taxis in Bacillus subtilis

(2019) Payman Tohidifar et al.   JOURNAL OF BACTERIOLOGY

Investigating the influence of iron on Campylobacter jejuni transcriptome in response to acid stress

(2019) Momen Askoura et al.   MICROBIAL PATHOGENESIS

Global transcriptomic analysis of Cronobacter sakazakii CICC 21544 by RNA-seq under inorganic acid and organic acid stresses

(2019) Ailian Zhou et al.   FOOD RESEARCH INTERNATIONAL

Modifying and reacting to the environmental pH can drive bacterial interactions

(2018) Christoph Ratzke et al.   PLOS BIOLOGY

Ribosome Profiling: Global Views of Translation

(2018) Nicholas T. Ingolia et al.   Cold Spring Harbor Perspectives in Biology

Bicarbonate Alters Bacterial Susceptibility to Antibiotics by Targeting the Proton Motive Force

(2017) Maya A. Farha et al.   ACS Infectious Diseases

Noisy Response to Antibiotic Stress Predicts Subsequent Single-Cell Survival in an Acidic Environment

(2017) Karin Mitosch et al.   Cell Systems

Biomining of metals: how to access and exploit natural resource sustainably

(2017) Carlos A. Jerez   Microbial Biotechnology

Biogeography of sulfur-oxidizing Acidithiobacillus populations in extremely acidic cave biofilms

(2016) Daniel S Jones et al.   ISME Journal

Antibiotic Bactericidal Activity Is Countered by Maintaining pH Homeostasis in Mycobacterium smegmatis

(2016) I. L. Bartek et al.   mSphere

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

(2015) Roi Avraham et al.   CELL

A FRET-Based DNA Biosensor Tracks OmpR-Dependent Acidification of Salmonella during Macrophage Infection

(2015) Smarajit Chakraborty et al.   PLOS BIOLOGY

Characterization of the YdeO Regulon in Escherichia coli

(2014) Yuki Yamanaka et al.   PLoS One

Internalization of Salmonella by Macrophages Induces Formation of Nonreplicating Persisters

(2014) S. Helaine et al.   SCIENCE

Acetic Acid Bacteria and the Production and Quality of Wine Vinegar

(2014) Albert Mas et al.   TheScientificWorldJOURNAL

Mechanisms of Acid Resistance inEscherichia coli

(2013) Usheer Kanjee et al.   Annual Review of Microbiology

Cytoplasmic pH Response to Acid Stress in Individual Cells of Escherichia coli and Bacillus subtilis Observed by Fluorescence Ratio Imaging Microscopy

(2012) Keith A. Martinez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Opposite responses by different chemoreceptors set a tunable preference point inEscherichia colipH taxis

(2012) Yiling Yang et al.   MOLECULAR MICROBIOLOGY

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Respiration and the F1Fo-ATPase Enhance Survival under Acidic Conditions in Escherichia coli

(2012) Yirong Sun et al.   PLoS One

Correction: A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli

(2012) Olin K. Silander et al.   PLoS Genetics

Bacterial persistence increases as environmental fitness decreases

(2012) Seok Hoon Hong et al.   Microbial Biotechnology

Implication of the NorB Efflux Pump in the Adaptation of Staphylococcus aureus to Growth at Acid pH and in Resistance to Moxifloxacin

(2011) Que Chi Truong-Bolduc et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Molecular aspects of bacterial pH sensing and homeostasis

(2011) Terry A. Krulwich et al.   NATURE REVIEWS MICROBIOLOGY

Antimicrobial Mechanism of Action of Transferrins: Selective Inhibition of H+-ATPase

(2010) M. T. Andres et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The effect of Pediococcus acidilactici on the gut microbiota and immune status of on-growing red tilapia (Oreochromis niloticus)

(2010) R.M.W. Ferguson et al.   JOURNAL OF APPLIED MICROBIOLOGY

Role of the AraC–XylS family regulator YdeO in multi-drug resistance of Escherichia coli

(2009) Kunihiko Nishino et al.   JOURNAL OF ANTIBIOTICS

Acid stress damage of DNA is prevented by Dps binding in Escherichia coli O157:H7

(2008) Kwang Jeong et al.   BMC MICROBIOLOGY